CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.6454.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 71.7 Gma.6454.1.S1_at BM271508 - - 2e-90 At5g25265 unknown protein S.X. H.G.
0.80 91.5 GmaAffx.22482.1.S1_at AW185059 - - 1e-28 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) S.X. H.G.
0.73 88.9 Gma.11925.1.S1_at CF922804 - - 3e-2 At1g11530 ATCXXS1 (C-terminal cysteine residue is changed to a serine 1) S.X. H.G.
0.67 86.1 Gma.12428.1.S1_a_at BI426385 - - 2e-28 At4g25680 unknown protein S.X. H.G.
0.56 78.2 Gma.15087.1.S1_at BI968833 - - 5e+0 At1g01530 AGL28 (AGAMOUS-LIKE 28) S.X. H.G.
0.55 76.3 Gma.10261.1.S1_at BG839311 - - 2e-52 At3g27090 - S.X. H.G.
0.53 74.2 GmaAffx.22482.1.S1_x_at AW185059 - - 1e-28 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.0 98.0 GSM294206 58_2338.2H.R240P_new, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9 98.0 GSM293459 47_1596.1R.R009P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM294218 69_3140.2H.R9H3P_new, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3 97.5 GSM294175 38_3132.2H.R9H1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3 97.5 GSM294571 41_3212.2L.R9L3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM294607 74_2540.2L.R156P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM294293 45_3162.2I.R9I3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8 97.0 GSM171625 16_Z.A.M.5, Experimental replicate Z GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
3.8 97.0 GSM294514 77_2502.2K.R025P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8 97.0 GSM292917 8_C216.1L.R9L3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 1e-135 484 Gma.6454.2.S1_at BQ610741 - - 7e-8 At5g25265 unknown protein C.G. S.X.
0.38 1e-135 484 Gma.6454.2.S1_x_at BQ610741 - - 7e-8 At5g25265 unknown protein C.G. S.X.
0.21 4e-25 117 Gma.4953.1.S1_at BM271325 - - 1e-22 At5g13500 unknown protein C.G. S.X.
0.06 3e-10 67 GmaAffx.29798.1.S1_at AI794786 - - 2e-6 At5g13500 unknown protein C.G. S.X.
0.02 3e-1 38 Gma.849.1.S1_at AW184880 - - 4e-4 At3g21190 unknown protein C.G. S.X.
0.02 3e-1 38 Gma.6704.1.S1_at BQ741597 bZIP transcription factor bZIP131 - 2e-2 At2g31370 bZIP transcription factor (POSF21) C.G. S.X.
0.01 1e+0 36 PsAffx.C4000052_at PsAffx.C4000052 - - 1e+0 At5g42050 - C.G. S.X.
0.02 1e+0 36 GmaAffx.86997.1.A1_at BI970908 - - 3e+0 At1g32928 unknown protein C.G. S.X.
0.01 1e+0 36 Gma.17145.2.S1_at CD396752 - - 0 At2g18450 SDH1-2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 2e-90 333 Arabidopsis thaliana At5g25265 832598 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;PO - - - C.G. S.X.
0.14 3e-11 69 Hordeum vulgare Contig2589_at Contig2589 - - 1e-3 At5g13500 unknown protein C.G. S.X.
0.37 1e-65 252 Oryza sativa Os06g0180000 AK069615.1 - Conserved hypothetical protein 3e-49 At5g25265 unknown protein C.G. S.X.
0.51 3e-152 539 Populus trichocarpa PtpAffx.214220.1.S1_x_at pmrna27667 hypothetical protein - 3e-67 At5g25265 unknown protein C.G. S.X.
0.21 6e-14 79 Triticum aestivum TaAffx.88842.1.S1_at CA643703 - - 2e-12 At5g13500 unknown protein C.G. S.X.
0.45 6e-79 293 Vitis vinifera 1619465_at CF519054 hypothetical protein LOC100249264 - 7e-65 At5g25265 unknown protein C.G. S.X.
0.09 3e-4 46 Zea mays Zm.2579.1.A1_at AW017722 hypothetical protein LOC100276855 - 2e-12 At5g25265 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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