Gene omics information

Query gene ID	Gma.6406.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.3	Gma.6406.1.S1_at	CD394756	-	-	0	At2g37620	ACT1 (ACTIN 1)	S.X.	H.G.	Please select
0.17	21.2	Gma.15483.2.S1_a_at	AW309524	-	-	2e-8	At1g23190	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	S.X.	H.G.	Please select
0.16	19.7	Gma.17625.1.S1_a_at	BI971077	-	-	6e-55	At4g14960	TUA6	S.X.	H.G.	Please select
0.16	19.7	Gma.6257.2.S1_a_at	BE658112	-	-	2e-12	At3g03250	UGP (UDP-glucose pyrophosphorylase)	S.X.	H.G.	Please select
0.16	19.7	Gma.11254.1.S1_a_at	CD391589	-	-	9e+0	At5g45040	cytochrome c6 (ATC6)	S.X.	H.G.	Please select
0.01	3.4	Gma.2203.1.A1_s_at	BG363719	-	-	6e-15	At1g64880	ribosomal protein S5 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.9	99.6	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
15.9	99.6	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
15.6	99.6	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
15.5	99.6	GSM309343	transgenic RNAiOleosin, biol rep 1, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
14.2	99.6	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
14.1	99.6	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
14.0	99.6	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
13.6	99.5	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
12.4	99.5	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
11.9	99.4	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	0	656	Gma.1913.1.S1_at	BI970928	-	-	0	At2g37620	ACT1 (ACTIN 1)	C.G.	S.X.	Please select
0.55	1e-142	508	Gma.16111.3.S1_a_at	CA802301	-	-	2e-148	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please select
0.55	1e-142	508	Gma.16111.3.S1_at	CA802301	-	-	2e-148	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please select
0.29	2e-134	480	GmaAffx.90398.1.S1_x_at	CF806123	-	-	7e-59	At2g37620	ACT1 (ACTIN 1)	C.G.	S.X.	Please select
0.44	3e-118	426	Gma.16111.2.A1_at	BU550402	-	-	9e-104	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please select
0.35	9e-94	345	GmaAffx.89997.1.S1_at	CF805722	-	-	1e-77	At3g53750	ACT3 (actin 3)	C.G.	S.X.	Please select
0.37	1e-89	331	Gma.1277.2.S1_at	AW666288	-	-	1e-118	At5g59370	ACT4 (ACTIN 4)	C.G.	S.X.	Please select
0.31	2e-70	268	Gma.10738.1.S1_at	BG653978	-	-	5e-121	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.33	2e-70	268	Gma.10738.2.S1_s_at	BQ629434	-	-	6e-121	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	724	Arabidopsis thaliana	At2g37620	818339	ACT1 (ACTIN 1)	Member of the actin gene family. Expressed in mature pollen.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.60	0	775	Hordeum vulgare	Contig1397_at	Contig1397	-	-	0	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please select
0.60	0	785	Oryza sativa	Os03g0718100	AB047313.1	-	Actin 1	0	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.54	0	668	Populus trichocarpa	PtpAffx.1258.4.S1_s_at	CF232778	actin 1 /// actin 9	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	5e-150	531	Triticum aestivum	Ta.1098.1.S1_at	BJ229397	-	-	1e-169	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please select
0.50	7e-162	569	Vitis vinifera	1606368_s_at	CF208516	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.59	5e-173	607	Zea mays	Zm.6944.2.S1_a_at	CF008486	-	-	2e-158	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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