Gene omics information

Query gene ID	Gma.6399.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	Gma.6399.1.S1_at	BI701478	-	-	9e-1	At5g59030	COPT1 (copper transporter 1)	S.X.	H.G.	Please select
0.92	98.9	Gma.6081.1.S1_at	BI967474	-	-	5e-5	At1g05850	POM1 (POM-POM1)	S.X.	H.G.	Please select
0.90	93.7	Gma.1188.1.A1_at	AW310201	-	-	1e-10	At1g13635	methyladenine glycosylase family protein	S.X.	H.G.	Please select
0.88	93.4	Gma.9086.1.S1_at	AW184932	-	-	6e-10	At4g18780	IRX1 (IRREGULAR XYLEM 1)	S.X.	H.G.	Please select
0.88	93.4	GmaAffx.55959.1.S1_at	BQ629429	-	-	5e-31	At5g54690	GAUT12 (GALACTURONOSYLTRANSFERASE 12)	S.X.	H.G.	Please select
0.87	93.2	Gma.18052.1.S1_at	BF595464	-	-	4e-23	At1g06890	transporter-related	S.X.	H.G.	Please select
0.85	92.8	Gma.15113.1.S1_a_at	AI973546	-	-	4e-1	At5g15290	integral membrane family protein	S.X.	H.G.	Please select
0.84	92.6	Gma.6331.1.S1_at	BQ612445	-	-	2e-44	At5g44030	CESA4 (CELLULOSE SYNTHASE A4)	S.X.	H.G.	Please select
0.84	92.6	GmaAffx.3712.1.S1_at	AW307307	-	-	7e-55	At5g17420	IRX3 (IRREGULAR XYLEM 3)	S.X.	H.G.	Please select
0.83	92.5	Gma.9086.2.S1_at	BE555169	-	-	5e-34	At4g18780	IRX1 (IRREGULAR XYLEM 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.6	99.8	GSM292245	5_C027.1B.V7B2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
15.2	99.6	GSM294206	58_2338.2H.R240P_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.1	99.5	GSM293215	95_C050.1O.SLO3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.5	99.4	GSM292272	17_C082.1E.SLE2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.2	99.4	GSM292221	15_C026.1B.SLB2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.0	99.4	GSM292301	48_1168.1E.R104P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.2	99.3	GSM294618	84_3204.2L.SLL1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.1	99.3	GSM292261	80_C027.1B.V7B2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.0	99.3	GSM292926	98_C204.1L.SLL1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.7	99.3	GSM293127	40_1148.1O.R093P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	PsAffx.C37000046_s_at	PsAffx.C37000046	-	-	2e+0	At5g62880	ARAC10	C.G.	S.X.	Please select
0.04	3e-1	36	GmaAffx.50320.1.S1_at	BI425390	-	-	2e-1	At1g56415	Expressed protein	C.G.	S.X.	Please select
0.04	3e-1	36	GmaAffx.49253.1.S1_at	BM086167	-	-	1e-21	At2g40940	ERS1 (ETHYLENE RESPONSE SENSOR 1)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C287000003_at	PsAffx.C287000003	-	-	4e-2	At1g22110	structural constituent of ribosome	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C173000013_at	PsAffx.C173000013	-	-	2e+0	At4g37140	MEE69 (MATERNAL EFFECT EMBRYO ARREST 69)	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C164000023_at	PsAffx.C164000023	-	-	1e-1	At3g23290	-	C.G.	S.X.	Please select
0.03	1e+0	34	HgAffx.3958.1.S1_at	CK348732	-	-	5e+0	At4g00580	COP1-interacting protein-related	C.G.	S.X.	Please select
0.04	1e+0	34	HgAffx.16319.1.S1_at	CB375459	-	-	6e-2	At5g39740	60S ribosomal protein L5 (RPL5B)	C.G.	S.X.	Please select
0.02	5e+0	32	PsAffx.CL86Contig2_at	PsAffx.CL86Contig2	-	-	8e+0	At5g38020	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	9e-1	34	Arabidopsis thaliana	At5g59030	836020	COPT1 (copper transporter 1)	encodes a putative copper transport protein that contains copper-binding motif and functionally complements in copper-transport defective yeast strains	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	30	Hordeum vulgare	HA09l22r_at	HA09l22r	-	-	7e-1	At5g26720	unknown protein	C.G.	S.X.	Please select
0.04	5e-1	36	Oryza sativa	Os06g0141700	AK121791.1	-	Early nodulin (ESTs C98096(C0688))	3e-1	At5g12300	C2 domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Populus trichocarpa	PtpAffx.87526.1.S1_at	BU893569	-	-	2e-2	At4g23130	CRK5 (CYSTEINE-RICH RLK5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.37395.1.S1_at	BJ281577	-	-	3e-1	At4g32490	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1621270_at	CB971990	hypothetical protein LOC100252531	-	4e-4	At5g11590	TINY2 (TINY2)	C.G.	S.X.	Please select
0.02	6e+0	30	Zea mays	Zm.9464.1.A1_at	CF972371	hypothetical protein LOC100272725	-	1e-1	At4g14385	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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