Gene omics information

Query gene ID	Gma.6150.2.S1_x_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	76.3	Gma.6150.2.S1_x_at	CD416056	-	-	1e-23	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	S.X.	H.G.	Please select
0.55	76.3	Gma.17719.1.S1_at	AI960464	-	-	2e-68	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.79047.1.S1_s_at	BU763803	-	-	8e+0	At1g53705	ATP binding / aminoacyl-tRNA ligase/ nucleotide binding	S.X.	H.G.	Please select
0.50	71.7	Gma.10799.1.S1_at	BG237181	-	-	4e-96	At4g26100	CK1 (CASEIN KINASE 1)	S.X.	H.G.	Please select
0.40	57.1	Gma.6450.1.S1_at	CD401012	-	-	6e-22	At1g18070	EF-1-alpha-related GTP-binding protein, putative	S.X.	H.G.	Please select
0.29	39.0	Gma.2259.1.S1_at	CD392275	-	-	3e-83	At1g16470	PAB1 (PROTEASOME SUBUNIT PAB1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	99.0	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.4	98.9	GSM191077	Soybean_Cotyledon_SUS1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
6.7	98.7	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
6.4	98.6	GSM201123	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.3	98.6	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.5	98.3	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.5	98.3	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.2	98.1	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.0	98.0	GSM147944	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.8	97.9	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.87	0	1253	Gma.6150.2.S1_s_at	CD416056	-	-	1e-23	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	C.G.	S.X.	Please select
0.80	0	1223	GmaAffx.88908.1.A1_x_at	CK605775	-	-	2e-28	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	C.G.	S.X.	Please select
0.75	0	1223	GmaAffx.88908.1.S1_at	CK605775	-	-	2e-28	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	C.G.	S.X.	Please select
0.55	1e-135	484	Gma.6150.1.S1_at	BU546188	-	-	1e-21	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	C.G.	S.X.	Please select
0.38	9e-90	331	Gma.4270.1.S1_at	CF920385	-	-	2e-19	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please select
0.38	9e-90	331	Gma.4270.1.S1_s_at	CF920385	-	-	2e-19	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please select
0.20	1e-70	268	Gma.6150.4.S1_at	BM143586	-	-	9e-16	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	C.G.	S.X.	Please select
0.01	7e-1	36	PsAffx.C46000047_at	PsAffx.C46000047	-	-	9e-3	At1g12830	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C11000113_s_at	PsAffx.C11000113	-	-	8e-3	At4g36070	CPK18	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	1e-23	111	Arabidopsis thaliana	At5g59880	836110	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	Encodes actin depolymerizing factor 3 (ADF3).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	1e-9	63	Hordeum vulgare	HZ54E21r_s_at	HZ54E21r	-	-	6e-17	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please select
Os08g0534900	0.07	1e+0	Oryza sativa	Os03g0197000	AK071163.1	-	Conserved hypothetical protein	2e-1	At1g02405	proline-rich family protein	C.G.	S.X.	Please select
0.36	4e-76	286	Populus trichocarpa	Ptp.1543.1.S1_at	CK089216	actin depolymerizing factor 6	-	2e-30	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	6e-13	75	Triticum aestivum	Ta.28622.1.A1_at	BJ248711	-	-	7e-8	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	C.G.	S.X.	Please select
0.38	1e-66	252	Vitis vinifera	1617797_s_at	CF210697	hypothetical protein LOC100263260	-	6e-46	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please select
0.08	2e-13	75	Zea mays	Zm.10502.1.S1_at	CO521816	actin-depolymerizing factor	-	3e-17	At4g25590	ADF7 (actin depolymerizing factor 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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