Gene omics information

Query gene ID	Gma.6053.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	71.7	Gma.6053.1.S1_at	CA852593	-	-	1e-23	At3g17330	ECT6 (evolutionarily conserved C-terminal region 6)	S.X.	H.G.	Please select
0.35	48.6	Gma.7655.1.S1_at	BQ629122	-	-	5e-37	At2g22670	IAA8	S.X.	H.G.	Please select
0.32	43.7	Gma.12442.1.S1_at	BE822323	-	-	5e-1	At1g19870	iqd32 (IQ-domain 32)	S.X.	H.G.	Please select
0.24	30.9	GmaAffx.49059.1.S1_at	AW596835	-	-	8e-67	At3g51850	CPK13	S.X.	H.G.	Please select
0.23	29.9	Gma.13580.2.S1_x_at	AW780839	tubulin A	-	3e-139	At1g50010	TUA2	S.X.	H.G.	Please select
0.18	22.3	GmaAffx.65064.1.S1_at	CA800739	-	-	7e-6	At5g03250	phototropic-responsive NPH3 family protein	S.X.	H.G.	Please select
0.07	10.2	Gma.14524.1.S1_at	BE020189	-	-	9e-24	At5g53480	importin beta-2, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.1	99.6	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
12.3	99.5	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
12.2	99.5	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
10.4	99.3	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
10.1	99.3	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
10.0	99.3	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
8.2	99.0	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
8.0	99.0	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
7.1	98.8	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
6.4	98.6	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	2e-65	250	GmaAffx.78777.1.S1_at	BF424078	-	-	3e-18	At1g48110	ECT7 (evolutionarily conserved C-terminal region 7)	C.G.	S.X.	Please select
0.18	4e-36	153	Gma.8230.1.S1_at	BU546548	-	-	6e+0	At5g18210	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.02	2e-1	38	GmaAffx.14927.1.S1_at	BQ627487	-	-	7e-3	At1g79270	ECT8 (evolutionarily conserved C-terminal region 8)	C.G.	S.X.	Please select
0.02	2e-1	38	Gma.11315.1.S1_at	BI425375	-	-	2e-58	At1g55500	ECT4	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C91000036_at	PsAffx.C91000036	-	-	1e+0	At5g23950	C2 domain-containing protein	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C419000001_at	PsAffx.C419000001	-	-	4e+0	At5g60810	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C201000020_at	PsAffx.C201000020	-	-	2e+0	At4g16540	heat shock protein-related	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C2000257_at	PsAffx.C2000257	-	-	3e-2	At1g77920	bZIP family transcription factor	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C2000245_at	PsAffx.C2000245	-	-	2e-1	At5g19590	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	1e-23	111	Arabidopsis thaliana	At3g17330	820996	ECT6 (evolutionarily conserved C-terminal region 6)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	7e-8	57	Hordeum vulgare	Contig6384_at	Contig6384	-	-	8e-20	At3g13460	ECT2	C.G.	S.X.	Please select
0.08	4e-9	63	Oryza sativa	Os01g0679900	AK120262.1	-	YTH domain protein 2 (High-glucose-regulatedprotein 8) (NY-REN-2 antigen) (CLL-associated antigenKW-14). Splice isoform 2	4e-10	At1g79270	ECT8 (evolutionarily conserved C-terminal region 8)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.48	2e-65	250	Populus trichocarpa	PtpAffx.209103.1.S1_at	pmrna18007	hypothetical protein	-	1e-18	At3g17330	ECT6 (evolutionarily conserved C-terminal region 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	3e-8	59	Triticum aestivum	TaAffx.9773.2.S1_at	CA607036	-	-	3e-7	At1g79270	ECT8 (evolutionarily conserved C-terminal region 8)	C.G.	S.X.	Please select
0.38	4e-76	284	Vitis vinifera	1619829_at	CB003964	-	-	1e-29	At1g48110	ECT7 (evolutionarily conserved C-terminal region 7)	C.G.	S.X.	Please select
0.07	3e-3	42	Zea mays	Zm.13185.1.A1_at	AY104045.1	-	-	1e-22	At3g13060	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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