CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.6024.1.S1_s_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 Gma.6024.1.S1_s_at CD397288 - - 5e-1 At5g41290 receptor-like protein kinase-related S.X. H.G.
0.50 71.7 Gma.8340.1.S1_at AW201258 - - 3e-3 At1g72390 unknown protein S.X. H.G.
0.44 63.3 GmaAffx.31571.1.S1_at BU551140 - - 2e+0 At3g46940 deoxyuridine 5'-triphosphate nucleotidohydrolase family S.X. H.G.
0.40 57.1 Gma.5040.1.S1_at BI970582 - - 1e-7 At5g61140 DEAD box RNA helicase, putative S.X. H.G.
0.26 33.9 Gma.2802.1.S1_at CD396311 - - 2e-29 At3g06810 IBR3 (IBA-RESPONSE 3) S.X. H.G.
0.20 25.1 Gma.8652.1.A1_at CD407809 - - 3e-1 At1g48160 signal recognition particle 19 kDa protein, putative / SRP19, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.7 98.7 GSM292373 47_C104.1F.R9F3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1 98.5 GSM293215 95_C050.1O.SLO3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7 98.4 GSM294218 69_3140.2H.R9H3P_new, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9 98.0 GSM294571 41_3212.2L.R9L3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8 97.9 GSM292768 30_C198.1K.R9K3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8 97.9 GSM294514 77_2502.2K.R025P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8 97.9 GSM292278 22_C090.1E.R9E3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8 97.9 GSM294197 4_3138.2H.R9H2P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7 97.8 GSM294132 86_3112.2G.R9G1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM292825 82_C184.1K.R9K1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.77 0 737 Gma.6024.2.S1_at CD405001 - - 6e-1 At1g20760 calcium-binding EF hand family protein C.G. S.X.
0.02 1e-2 42 Gma.5452.1.A1_at AW350782 - - 2e+0 At4g38930 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
0.02 6e-1 36 Gma.5825.2.S1_at BQ612170 - - 5e-10 At5g20700 senescence-associated protein-related C.G. S.X.
0.01 3e+0 34 PsAffx.C2000088_at PsAffx.C2000088 - - 7e-1 At1g56050 GTP-binding protein-related C.G. S.X.
0.02 3e+0 34 GmaAffx.87839.2.S1_at BQ786212 - - 4e-50 At4g00090 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.02 3e+0 34 GmaAffx.80433.1.S1_at BU082006 - - 7e+0 At5g04347 - C.G. S.X.
0.02 3e+0 34 GmaAffx.58130.1.S1_at BE347895 - - 9e-1 At2g25344 LCR14 (Low-molecular-weight cysteine-rich 14) C.G. S.X.
0.03 3e+0 34 GmaAffx.33971.1.A1_at CD393461 - - 1e-2 At2g21870 unknown protein C.G. S.X.
0.02 3e+0 34 Gma.8003.1.A1_at BU547117 - - 1e+0 At3g08000 RNA-binding protein, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 36 Arabidopsis thaliana At5g41290 834130 receptor-like protein kinase-related F:unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P - - - C.G. S.X.
0.06 1e-2 40 Hordeum vulgare Contig8880_at Contig8880 - - 4e-1 At4g09260 unknown protein C.G. S.X.
0.04 9e-1 36 Oryza sativa Os.8291.1.A1_at - - - 0 C.G. S.X.
0.09 3e-6 54 Populus trichocarpa PtpAffx.146878.2.A1_at CV265444 hypothetical protein - 1e+0 At4g18500 unknown protein C.G. S.X.
0.04 2e+0 34 Triticum aestivum Ta.2282.3.S1_at CA651230 - - 4e+0 At3g07850 exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase C.G. S.X.
0.08 4e-5 48 Vitis vinifera 1607195_at CF209963 hypothetical protein LOC100240982 - 1e-1 At4g27460 CBS domain-containing protein C.G. S.X.
0.04 8e-1 34 Zea mays Zm.3729.1.A1_at BE510951 hypothetical protein LOC100194194 - 6e-1 At4g09260 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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