CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.6006.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 65.5 Gma.6006.1.S1_at BQ610956 - - 7e-16 At1g74790 catalytic S.X. H.G.
0.43 60.6 GmaAffx.82810.1.S1_at AI437666 - - 1e-18 At1g74790 catalytic S.X. H.G.
0.43 60.6 Gma.5813.1.S1_at AW349069 - - 6e-3 At4g33660 unknown protein S.X. H.G.
0.33 46.1 GmaAffx.49229.2.S1_at BE609485 - - 4e-9 At2g29050 ATRBL1 (Arabidopsis thaliana Rhomboid-like 1) S.X. H.G.
0.25 32.6 GmaAffx.78753.1.S1_at CA782920 - - 4e+0 At5g02510 unknown protein S.X. H.G.
0.21 26.6 GmaAffx.26356.1.S1_at BE059453 - - 3e-77 At1g30270 CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.3 98.2 GSM293353 40_1564.1Q.R151P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7 97.8 GSM293455 43_1603.1R.R018L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM292576 86_1283.1H.R180U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5 97.7 GSM292775 37_1428.1K.R263P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4 97.6 GSM292734 79_1378.1J.R236P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3 97.5 GSM292754 18_1413.1K.R256L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3 97.5 GSM292661 12_1377.1J.R236L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2 97.4 GSM292817 75_1415.1K.R257L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM292633 60_1358.1I.R224P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM293310 91_1180.1P.R110P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 38 PsAffx.C33000007_at PsAffx.C33000007 - - 1e+0 At4g33467 unknown protein C.G. S.X.
0.01 2e-1 38 Gma.11315.1.S1_at BI425375 - - 2e-58 At1g55500 ECT4 C.G. S.X.
0.01 8e-1 36 PsAffx.C928000001_at PsAffx.C928000001 - - 9e-2 At4g33660 unknown protein C.G. S.X.
0.01 8e-1 36 Gma.2486.1.S1_at BF219523 - - 7e-7 At2g34555 ATGA2OX3 (gibberellin 2-oxidase 3) C.G. S.X.
0.02 8e-1 36 Gma.15151.2.A1_at BU577357 - - 9e-2 At3g27280 ATPHB4 (PROHIBITIN 4) C.G. S.X.
0.02 8e-1 36 Gma.15151.2.A1_s_at BU577357 - - 9e-2 At3g27280 ATPHB4 (PROHIBITIN 4) C.G. S.X.
0.00 3e+0 34 PsAffx.C7000008_at PsAffx.C7000008 - - 8e-1 At2g42870 PAR1 (PHY RAPIDLY REGULATED 1) C.G. S.X.
0.00 3e+0 34 PsAffx.C15000106_at PsAffx.C15000106 - - 6e-2 At3g17830 DNAJ heat shock family protein C.G. S.X.
0.01 3e+0 34 PsAffx.C129000054_at PsAffx.C129000054 - - 7e-1 At5g27200 ACP5 (acyl carrier protein 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 7e-16 85 Arabidopsis thaliana At1g74790 843818 catalytic F:catalytic activity;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMAF - - - C.G. S.X.
0.03 3e-1 36 Hordeum vulgare HW06O18u_at HW06O18u - - 4e+0 At4g32130 carbohydrate binding C.G. S.X.
0.07 4e-3 44 Oryza sativa Os12g0639600 AK122084.1 - Soluble quinoprotein glucose dehydrogenase domaincontaining protein 2e-8 At1g74790 catalytic C.G. S.X.
0.25 2e-29 131 Populus trichocarpa PtpAffx.213898.1.S1_at pmrna27100 hypothetical protein - 2e-11 At5g39970 catalytic C.G. S.X.
0.10 6e-7 56 Triticum aestivum Ta.5666.1.S1_at CA644554 - - 3e-5 At5g39970 catalytic C.G. S.X.
0.12 1e-11 69 Vitis vinifera 1618687_at CB345064 hypothetical protein LOC100245038 - 2e+0 At1g74790 catalytic C.G. S.X.
0.02 1e-2 40 Zea mays Zm.6370.1.A1_at BG266097 - - 2e+0 At3g47300 SELT (SELT-LIKE PROTEIN PRECURSOR) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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