Gene omics information

Query gene ID	Gma.597.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	98.9	Gma.597.2.S1_at	AW621016	-	-	9e-11	At4g34970	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	S.X.	H.G.	Please select
0.16	19.7	Gma.6836.1.A1_s_at	AW349121	-	-	4e-1	At1g56700	pyrrolidone-carboxylate peptidase family protein	S.X.	H.G.	Please select
0.16	19.7	Gma.5718.3.S1_x_at	BU763515	-	-	3e-29	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	S.X.	H.G.	Please select
0.13	16.3	Gma.5780.1.S1_at	CD393664	-	-	2e+0	At3g53075	beta-galactosidase/ sugar binding	S.X.	H.G.	Please select
0.10	13.0	Gma.10867.2.S1_s_at	CD397580	-	-	1e-59	At4g27130	eukaryotic translation initiation factor SUI1, putative	S.X.	H.G.	Please select
0.06	9.0	GmaAffx.8999.1.S1_at	CD403960	-	-	1e-32	At5g25760	PEX4 (PEROXIN4)	S.X.	H.G.	Please select
0.05	8.0	Gma.3757.2.S1_a_at	AI941326	-	-	8e-35	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.2	99.9	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
18.2	99.7	GSM147935	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
17.3	99.7	GSM201127	Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
17.2	99.7	GSM294218	69_3140.2H.R9H3P_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
15.0	99.6	GSM294661	33_3230.2M.SLM3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.4	99.6	GSM293390	74_1588.1Q.R230P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.8	99.5	GSM294114	6_3114.2G.SLG1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.5	99.5	GSM294432	87_3176.2J.SLJ3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.4	99.5	GSM293328	18_C090.1Q.R9Q3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.7	99.4	GSM293325	15_1584.1Q.R209P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	920	Gma.597.2.S1_a_at	AW621016	-	-	9e-11	At4g34970	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	C.G.	S.X.	Please select
0.48	2e-120	432	Gma.597.1.S1_s_at	AI443313	-	-	2e-24	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please select
0.48	2e-59	230	GmaAffx.54969.1.S1_at	BQ576564	-	-	6e-31	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please select
0.38	3e-54	212	GmaAffx.54969.2.S1_at	AW568433	-	-	4e-25	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please select
0.38	3e-54	212	GmaAffx.54969.2.S1_s_at	AW568433	-	-	4e-25	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please select
0.13	3e-14	79	Gma.4373.1.S1_s_at	BF070388	-	-	1e-22	At2g31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	C.G.	S.X.	Please select
0.12	3e-11	69	Gma.1541.1.S1_at	BE657337	-	-	1e-11	At2g31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	C.G.	S.X.	Please select
0.04	1e-1	38	Gma.4270.1.S1_at	CF920385	-	-	2e-19	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please select
0.04	1e-1	38	Gma.4270.1.S1_s_at	CF920385	-	-	2e-19	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	9e-11	67	Arabidopsis thaliana	At4g34970	829649	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	F:actin binding;P:biological_process unknown;C:intracellular;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	2e-7	56	Hordeum vulgare	Contig5692_s_at	Contig5692	-	-	6e-12	At4g34970	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	C.G.	S.X.	Please select
0.14	7e-7	56	Oryza sativa	Os03g0243100	AK104056.1	-	Actin-depolymerizing factor 5 (ADF-5) (AtADF5)	2e-16	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	8e-46	184	Populus trichocarpa	PtpAffx.57531.1.A1_at	CV264188	hypothetical protein	-	5e-31	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	9e-5	48	Triticum aestivum	Ta.5577.2.S1_at	CA624616	-	-	8e-14	At3g46000	ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)	C.G.	S.X.	Please select
0.13	1e-10	65	Vitis vinifera	1607336_at	BQ800260	hypothetical protein LOC100242532	-	9e-15	At2g31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	C.G.	S.X.	Please select
0.09	1e-7	56	Zea mays	Zm.1019.1.A1_at	AW288674	actin-depolymerizing factor 5	-	2e-19	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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