CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.595.1.S1_at

Gene name beta-amylase

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 92.5 Gma.595.1.S1_at AB004271.1 beta-amylase - 2e-11 At2g32290 BAM6 (BETA-AMYLASE 6) S.X. H.G.
0.64 83.4 Gma.16677.1.S1_at CD418377 - - 1e+0 At5g63087 - S.X. H.G.
0.57 78.8 Gma.7270.1.S1_at CD415919 - - 4e-55 At3g29320 glucan phosphorylase, putative S.X. H.G.
0.55 76.3 GmaAffx.89045.1.A1_s_at CK605938 - - 4e-19 At1g11545 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative S.X. H.G.
0.55 76.3 Gma.1281.1.S1_at BM092139 - - 1e-1 At5g24230 - S.X. H.G.
0.48 67.7 Gma.1281.2.S1_at BG510307 - - 2e+0 At4g26210 mitochondrial ATP synthase g subunit family protein S.X. H.G.
0.42 59.3 GmaAffx.59377.2.S1_at BE347738 - - 1e-9 At1g12600 - S.X. H.G.
0.40 57.1 GmaAffx.59377.1.S1_at BM528731 - - 2e-30 At1g12600 - S.X. H.G.
0.36 50.8 Gma.1547.2.S1_a_at CA800377 DnaJ-like protein - 3e-6 At1g56300 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.35 48.6 GmaAffx.67291.1.S1_at BE608448 - - 3e-1 At2g47950 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
113.6 100.0 GSM309344 transgenic RNAiOleosin, biol rep 1, tech rep 2 GSE12300 Suppression of oleosin in soybean cotyledon
113.3 100.0 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
108.9 100.0 GSM309527 storage protein suppression expt, control tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
108.4 100.0 GSM309341 Wild type 1 GSE12300 Suppression of oleosin in soybean cotyledon
107.0 100.0 GSM309343 transgenic RNAiOleosin, biol rep 1, tech rep 1 GSE12300 Suppression of oleosin in soybean cotyledon
103.2 100.0 GSM309528 storage protein suppression expt, control tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
88.7 100.0 GSM309342 Wild type 2 GSE12300 Suppression of oleosin in soybean cotyledon
87.2 100.0 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
86.2 100.0 GSM238050 Soybean-Mandarin-6-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
78.5 100.0 GSM309345 transgenic RNAiOleosin, biol rep 2, tech rep 1 GSE12300 Suppression of oleosin in soybean cotyledon
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 GmaAffx.17775.2.S1_s_at BQ610036 - - 2e-2 At1g24270 unknown protein C.G. S.X.
0.01 3e-1 38 GmaAffx.17775.1.S1_at CA820121 - - 2e-15 At5g27280 zinc finger (DNL type) family protein C.G. S.X.
0.02 3e-1 38 GmaAffx.17775.2.S1_at BQ610036 - - 2e-2 At1g24270 unknown protein C.G. S.X.
0.02 3e-1 38 Gma.7205.1.A1_at AW760424 - - 1e+0 At2g13570 NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7) C.G. S.X.
0.01 1e+0 36 PsAffx.C128000045_at PsAffx.C128000045 - - 1e-1 At3g63210 MARD1 C.G. S.X.
0.00 1e+0 36 PsAffx.C130000002_at PsAffx.C130000002 - - 2e-1 At3g63210 MARD1 C.G. S.X.
0.01 1e+0 36 Gma.3546.1.S1_at CD393802 - - 3e-15 At3g48560 CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) C.G. S.X.
0.01 5e+0 34 PsAffx.CL2286Contig1_at PsAffx.CL2286Contig1 - - 1e+0 At5g04760 myb family transcription factor C.G. S.X.
0.01 5e+0 34 PsAffx.C60000048_at PsAffx.C60000048 - - 9e+0 At3g59650 mitochondrial ribosomal protein L51/S25/CI-B8 family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-11 71 Arabidopsis thaliana At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO - - - C.G. S.X.
0.12 5e-4 46 Hordeum vulgare Contig1411_s_at Contig1411 - - 6e-5 At4g15210 BAM5 (BETA-AMYLASE 5) C.G. S.X.
0.20 3e-11 71 Oryza sativa Os07g0543300 BM418911 - Glycoside hydrolase, family 14B, plant protein 2e+1 At5g43401 - C.G. S.X.
0.35 3e-35 151 Populus trichocarpa Ptp.3245.1.S1_s_at CV276464 hypothetical protein - 7e-14 At2g32290 BAM6 (BETA-AMYLASE 6) C.G. S.X.
0.09 6e-5 50 Triticum aestivum Ta.27780.1.S1_x_at CD916747 beta amylase - 2e-2 At4g15210 BAM5 (BETA-AMYLASE 5) C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1614555_at CF518554 hypothetical protein LOC100254478 - 2e-13 At5g45300 BMY2 (BETA-AMYLASE 2) C.G. S.X.
0.14 3e-8 59 Zea mays Zm.80.1.A1_at CD972407 beta-amylase - 6e-2 At2g32290 BAM6 (BETA-AMYLASE 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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