CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.5710.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 87.8 Gma.5710.1.S1_at AI442566 - - 7e-5 At4g08230 glycine-rich protein S.X. H.G.
0.73 88.9 Gma.6280.2.S1_at AI938985 cysteine synthase - 8e-1 At5g01070 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.61 81.8 Gma.6280.1.S1_at AI988271 cysteine synthase - 6e-8 At5g28020 CYSD2 (CYSTEINE SYNTHASE D2) S.X. H.G.
0.47 66.6 Gma.4970.2.S1_a_at BI971469 - - 9e-14 At4g19880 - S.X. H.G.
0.40 57.1 Gma.6240.1.S1_at BQ612395 - - 8e-12 At1g34750 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.35 48.6 GmaAffx.89819.1.S1_s_at CK606604 - - 6e-61 At3g18820 ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) S.X. H.G.
0.33 46.1 GmaAffx.71281.1.S1_at BM523190 - - 2e+0 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.4 93.8 GSM292655 81_C155.1I.V7I2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3 93.3 GSM292645 72_1339.1I.R213L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3 93.3 GSM294057 15_2315.2G.R122L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3 93.3 GSM292842 21_1443.1L.R271L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2 92.8 GSM171696 32_Y.C.I.3, Experimental replicate Y GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
2.2 92.8 GSM294047 96_3095.2F.R9F1L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.1 92.3 GSM171668 26_Y.L.I.5, Experimental replicate Y GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
2.1 92.3 GSM171654 23_V.A.I.5, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
2.1 92.3 GSM294524 86_2501.2K.R025U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.0 91.7 GSM294044 93_2261.2F.R205L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-15 83 GmaAffx.85125.1.S1_at BF325264 - - 4e-3 At3g10250 unknown protein C.G. S.X.
0.05 1e-7 57 Gma.4563.2.S1_at BE805396 - - 9e-8 At4g16430 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.05 6e-3 42 GmaAffx.73080.1.S1_at BI427357 - - 2e-1 At4g21620 glycine-rich protein C.G. S.X.
0.03 6e-3 42 GmaAffx.26511.1.S1_at BE658453 - - 1e-1 At5g15600 SP1L4 (SPIRAL1-LIKE4) C.G. S.X.
0.04 2e-2 40 HgAffx.13930.1.S1_at CB374003 - - 1e-2 At1g53625 unknown protein C.G. S.X.
0.04 1e-1 38 PsAffx.psMC008xL10f_at PsAffx.psMC008xL10f - - 1e+1 At3g15780 unknown protein C.G. S.X.
0.01 1e-1 38 PsAffx.C4000044_at PsAffx.C4000044 - - 3e-2 At3g57500 unknown protein C.G. S.X.
0.01 1e-1 38 PsAffx.C218000014_at PsAffx.C218000014 - - 5e+0 At4g39070 zinc finger (B-box type) family protein C.G. S.X.
0.01 1e-1 38 PsAffx.C21000014_at PsAffx.C21000014 - - 1e-3 At5g57000 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 7e-5 48 Arabidopsis thaliana At4g08230 826373 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA - - - C.G. S.X.
0.04 3e-2 38 Hordeum vulgare HM10K10r_at HM10K10r - - 2e-2 At3g10185 - C.G. S.X.
0.15 1e-4 48 Oryza sativa Os03g0263700 AK071748.1 - Conserved hypothetical protein 5e+0 At5g06020 self-incompatibility protein-related C.G. S.X.
0.23 9e-36 151 Populus trichocarpa PtpAffx.12741.1.A1_at CV234093 - - 8e-2 At4g08230 glycine-rich protein C.G. S.X.
0.05 5e-3 42 Triticum aestivum TaAffx.3722.2.S1_s_at CA594125 - - 4e-3 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) C.G. S.X.
0.24 8e-33 139 Vitis vinifera 1622126_at CF568916 - - 7e-8 At4g08230 glycine-rich protein C.G. S.X.
0.09 3e-2 38 Zea mays Zm.7113.1.A1_at AY107196.1 - - 6e-1 At5g19090 heavy-metal-associated domain-containing protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage