Gene omics information

Query gene ID	Gma.5683.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	80.7	Gma.5683.2.S1_at	CA935387	-	-	7e-75	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.63706.1.S1_s_at	BG650539	-	-	8e-1	At1g22750	unknown protein	S.X.	H.G.	Please select
0.44	63.3	Gma.11260.1.S1_x_at	AI759626	-	-	2e-16	At3g12290	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	S.X.	H.G.	Please select
0.40	57.1	Gma.11260.1.S1_a_at	AI759626	-	-	2e-16	At3g12290	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	S.X.	H.G.	Please select
0.36	50.8	Gma.13478.1.A1_at	CD398928	-	-	8e-7	At4g33670	L-galactose dehydrogenase (L-GalDH)	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.65711.1.S1_at	BE657461	-	-	3e-1	At5g16760	inositol 1,3,4-trisphosphate 5/6-kinase	S.X.	H.G.	Please select
0.24	30.9	GmaAffx.68076.1.S1_at	BM885986	-	-	6e-6	At5g04060	dehydration-responsive protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
47.8	99.9	GSM191089	Soybean_Cotyledon_OI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
41.7	99.9	GSM191090	Soybean_Cotyledon_OI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
39.8	99.9	GSM201115	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
35.5	99.9	GSM201111	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
34.5	99.9	GSM201125	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
28.7	99.8	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
28.3	99.8	GSM191088	Soybean_Cotyledon_II2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
26.8	99.8	GSM201124	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
26.0	99.8	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
25.5	99.8	GSM201121	Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	0	745	Gma.4424.1.S1_at	BG237912	-	-	2e-40	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select
0.14	2e-60	234	Gma.5683.1.S1_at	CD410890	-	-	4e-14	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	C.G.	S.X.	Please select
0.14	2e-60	234	Gma.5683.1.S1_x_at	CD410890	-	-	4e-14	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	C.G.	S.X.	Please select
0.14	2e-60	234	Gma.5683.1.S1_s_at	CD410890	-	-	4e-14	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	C.G.	S.X.	Please select
0.02	6e-2	40	Gma.13292.1.S1_at	CD396729	-	-	2e-8	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please select
0.01	2e-1	38	PsAffx.C7000213_at	PsAffx.C7000213	-	-	3e+0	At5g04520	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	36	PsAffx.C113000031_at	PsAffx.C113000031	-	-	8e-1	At5g67640	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	36	GmaAffx.9174.1.A1_at	BG509232	-	-	3e-3	At2g28940	protein kinase family protein	C.G.	S.X.	Please select
0.02	9e-1	36	GmaAffx.29330.1.S1_at	CA801525	-	-	3e+0	At5g11760	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	7e-75	282	Arabidopsis thaliana	At1g11840	837731	ATGLX1 (GLYOXALASE I HOMOLOG)	Encodes a glyoxalase I homolog ATGLX1.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	2e-18	93	Hordeum vulgare	Contig1934_at	Contig1934	-	-	7e-13	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select
0.15	1e-22	109	Oryza sativa	Os08g0191700	AK066092.1	-	Glyoxalase I family protein	2e-13	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.47	6e-76	286	Populus trichocarpa	Ptp.2633.1.S1_at	CK095904	hypothetical protein	-	2e-75	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	2e-19	97	Triticum aestivum	Ta.15606.1.S1_at	CD491155	-	-	4e-10	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select
0.55	2e-168	591	Vitis vinifera	1609781_s_at	CB341681	hypothetical protein LOC100257313	-	1e-66	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select
0.22	1e-12	73	Zea mays	Zm.5962.1.S1_a_at	AY241545.1	glyoxalase I	-	1e-17	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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