Gene omics information

Query gene ID	Gma.5658.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.5658.2.S1_at	BQ741786	-	-	8e-1	At2g20784	unknown protein	S.X.	H.G.	Please select
0.12	15.1	GmaAffx.73299.1.S1_at	BF597534	-	-	8e-3	At2g01680	ankyrin repeat family protein	S.X.	H.G.	Please select
0.11	14.2	GmaAffx.92988.1.S1_at	CF808713	-	-	7e-2	At2g05590	-	S.X.	H.G.	Please select
0.08	11.0	GmaAffx.5370.1.S1_at	BI970962	-	-	2e-1	At5g35100	peptidyl-prolyl cis-trans isomerase	S.X.	H.G.	Please select
0.04	7.0	Gma.5237.2.S1_at	BI423744	-	-	5e-6	At3g55960	NLI interacting factor (NIF) family protein	S.X.	H.G.	Please select
0.01	3.4	GmaAffx.56888.1.S1_at	BF069451	-	-	3e-3	At3g16230	RNA binding / catalytic	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.9	99.4	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.5	98.7	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3	98.6	GSM293892	42_2212.2E.R101P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3	98.6	GSM292969	47_C222.1M.R9M1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM293724	59_2130.2C.R207P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM292886	61_1483.1L.R292U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM293289	72_1238.1P.R145P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM292868	45_1470.1L.R285P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	GmaAffx.37797.1.S1_at	BU549753	-	-	6e-15	At5g10330	HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.6517.1.S1_at	BE822472	-	-	1e-5	At4g25670	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.5658.1.S1_at	AW351312	-	-	5e-48	At2g21270	ubiquitin fusion degradation UFD1 family protein	C.G.	S.X.	Please select
0.03	5e+0	32	PsAffx.psMA013xP14f_at	PsAffx.psMA013xP14f	-	-	1e+0	At3g15534	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C119000004_at	PsAffx.C119000004	-	-	2e+0	At5g67490	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	32	GmaAffx.3741.1.S1_at	BM307322	-	-	7e-6	At5g26610	D111/G-patch domain-containing protein	C.G.	S.X.	Please select
0.02	5e+0	32	GmaAffx.3741.2.S1_at	BE608737	-	-	1e-5	At5g26610	D111/G-patch domain-containing protein	C.G.	S.X.	Please select
0.01	5e+0	32	GmaAffx.26568.1.S1_at	BG839279	-	-	2e-11	At1g70940	PIN3 (PIN-FORMED 3)	C.G.	S.X.	Please select
0.03	5e+0	32	GmaAffx.15953.2.S1_at	AI899847	-	-	2e-12	At5g53900	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	8e-1	34	Arabidopsis thaliana	At2g20784	6240897	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	6e+0	30	Hordeum vulgare	HV_CEb0002I14r2_at	HV_CEb0002I14r2	-	-	4e+0	At4g01940	NFU1	C.G.	S.X.	Please select
0.05	3e+1	30	Oryza sativa	OsAffx.8826.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Populus trichocarpa	PtpAffx.222971.1.S1_at	pmrna40717	hypothetical protein	-	4e+0	At5g37660	PDLP7 (PLASMODESMATA-LOCATED PROTEIN 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	Ta.15482.1.S1_at	CA484950	-	-	6e-1	At2g20784	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1617534_at	CF405795	-	-	3e+0	At5g41760	nucleotide-sugar transporter family protein	C.G.	S.X.	Please select
0.04	6e+0	30	Zea mays	Zm.16283.1.A1_s_at	AI637233	hypothetical protein LOC100279905	-	3e+0	At5g64880	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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