Gene omics information

Query gene ID	Gma.5650.2.S1_a_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.3	Gma.5650.2.S1_a_at	BG238507	-	-	4e-6	At4g39260	GR-RBP8	S.X.	H.G.	Please select
0.45	63.9	Gma.12520.1.S1_at	CD394537	-	-	2e+0	At4g00030	plastid-lipid associated protein PAP / fibrillin family protein	S.X.	H.G.	Please select
0.43	60.6	GmaAffx.87532.1.S1_s_at	BG155694	-	-	9e-1	At2g24590	splicing factor, putative	S.X.	H.G.	Please select
0.41	58.1	GmaAffx.73258.2.S1_at	BM528903	-	-	1e+0	At4g36540	BEE2 (BR Enhanced Expression 2)	S.X.	H.G.	Please select
0.37	51.7	GmaAffx.46661.1.S1_at	BI784809	-	-	1e-25	At2g28480	RNA binding	S.X.	H.G.	Please select
0.35	48.6	Gma.16462.2.S1_at	BE475088	-	-	2e-20	At1g21760	FBP7 (F-BOX PROTEIN 7)	S.X.	H.G.	Please select
0.30	40.4	GmaAffx.15471.3.S1_s_at	BE346777	MYB transcription factor MYB145	-	4e-9	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	S.X.	H.G.	Please select
0.29	39.0	Gma.10975.2.S1_s_at	BQ743096	-	-	5e-6	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	S.X.	H.G.	Please select
0.26	33.9	GmaAffx.1853.2.S1_at	AW756762	-	-	9e-1	At4g33465	SCRL22 (SCR-Like 22)	S.X.	H.G.	Please select
0.24	30.9	Gma.4108.1.S1_s_at	BI701465	-	-	2e+0	At3g51410	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.8	99.3	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
8.6	99.1	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.4	99.1	GSM293247	34_C066.1P.R9P2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.8	99.0	GSM293105	20_C054.1O.R9O3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.8	99.0	GSM293126	3_C038.1O.R9O1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.7	99.0	GSM292890	65_C202.1L.R9L1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.6	98.9	GSM293724	59_2130.2C.R207P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.4	98.9	GSM293289	72_1238.1P.R145P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.2	98.9	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
7.1	98.8	GSM294293	45_3162.2I.R9I3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	3e-72	272	GmaAffx.5376.1.S1_s_at	BI321591	-	-	2e-12	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.41	3e-69	262	GmaAffx.90323.1.A1_s_at	CF806048	-	-	4e-7	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.35	3e-69	262	GmaAffx.90323.1.S1_at	CF806417	-	-	4e-7	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.42	2e-61	236	Gma.17650.1.S1_at	BG156513	Glycine-rich RNA-binding protein (GRP)	-	2e-5	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.57	2e-61	236	Gma.16817.1.S1_s_at	AF169205.1	glycine-rich RNA-binding protein	-	2e-5	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.45	3e-54	212	GmaAffx.30043.1.S1_at	AW099862	-	-	1e-4	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.11	1e-22	107	Gma.17650.2.S1_at	BE607734	-	-	1e-2	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.06	7e-15	81	Gma.15462.1.S1_a_at	AW350341	-	-	1e-11	At3g53460	CP29	C.G.	S.X.	Please select
0.04	4e-4	46	Gma.5864.1.S1_at	BF067737	-	-	1e-10	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	4e-6	52	Arabidopsis thaliana	At4g39260	830082	GR-RBP8	Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e-1	36	Hordeum vulgare	Contig17116_at	Contig17116	-	-	2e+0	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.04	3e-2	40	Oryza sativa	Os01g0876800	BI804947	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	3e+0	At5g28770	BZO2H3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	2e-18	93	Populus trichocarpa	PtpAffx.249.633.A1_x_at	CV259819	-	-	1e-9	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	7e-2	38	Triticum aestivum	Ta.17729.1.S1_x_at	CA623878	-	-	6e-2	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.40	2e-27	121	Vitis vinifera	1621554_s_at	CF511998	similar to Os03g0670700	-	4e-6	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.08	7e-6	50	Zea mays	Zm.1305.1.S1_at	AF034945.1	glycine-rich RNA binding protein	-	1e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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