Gene omics information

Query gene ID	Gma.560.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.32	43.7	Gma.560.1.S1_at	AW310905	-	-	1e-14	At2g26690	nitrate transporter (NTP2)	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.86049.1.S1_at	BF598238	-	-	7e-12	At3g48720	transferase family protein	S.X.	H.G.	Please select
0.28	39.0	Gma.3172.1.S1_s_at	BU550006	-	-	3e-3	At5g64120	peroxidase, putative	S.X.	H.G.	Please select
0.25	32.6	Gma.11719.1.A1_at	AW310532	-	-	2e+0	At1g17620	-	S.X.	H.G.	Please select
0.19	23.7	GmaAffx.10908.2.S1_at	CA802289	-	-	2e-2	At1g18835	MIF3 (MINI ZINC FINGER)	S.X.	H.G.	Please select
0.08	11.0	GmaAffx.67541.1.A1_at	BE822136	-	-	2e-1	At5g26692	-	S.X.	H.G.	Please select
0.06	9.0	Gma.7424.1.S1_at	AW184812	-	-	6e-1	At2g39060	nodulin MtN3 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
49.4	99.9	GSM292197	59_C014.1A.SLA3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
31.6	99.9	GSM293016	21_1058.1N.R033P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
31.0	99.9	GSM292175	30-C012.1A.SLA2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
28.2	99.8	GSM294322	71_2406.2I.R084P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
27.4	99.8	GSM293459	47_1596.1R.R009P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
25.7	99.8	GSM294514	77_2502.2K.R025P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
25.6	99.8	GSM293419	10_C108.1R.R9R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
25.0	99.8	GSM292224	18_C022.1B.SLB1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
24.3	99.8	GSM293328	18_C090.1Q.R9Q3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
24.1	99.8	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	7e-156	551	Gma.4837.1.S1_at	BI969343	-	-	4e-13	At2g26690	nitrate transporter (NTP2)	C.G.	S.X.	Please select
0.02	3e-1	38	GmaAffx.89144.1.A1_s_at	CK605580	-	-	2e-21	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	C.G.	S.X.	Please select
0.02	3e-1	38	GmaAffx.89144.1.S1_at	CK605580	-	-	2e-21	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	C.G.	S.X.	Please select
0.02	1e+0	36	GmaAffx.64176.1.S1_at	BI893304	-	-	3e+0	At1g13755	-	C.G.	S.X.	Please select
0.02	1e+0	36	Gma.15113.3.S1_at	AW705786	-	-	4e-1	At5g11950	protein homodimerization	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C45000083_at	PsAffx.C45000083	-	-	3e-1	At5g05990	mitochondrial glycoprotein family protein / MAM33 family protein	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C301000002_at	PsAffx.C301000002	-	-	2e-1	At5g63720	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C3000205_at	PsAffx.C3000205	-	-	3e-1	At1g72280	AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1)	C.G.	S.X.	Please select
0.02	4e+0	34	GmaAffx.84688.1.S1_at	AI460889	-	-	5e-24	At4g14240	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	1e-14	81	Arabidopsis thaliana	At2g26690	817210	nitrate transporter (NTP2)	F:transporter activity;P:response to jasmonic acid stimulus, response to wounding;C:membrane;BPOMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	6e-3	42	Hordeum vulgare	Contig7712_at	Contig7712	-	-	2e+0	At1g32700	zinc-binding family protein	C.G.	S.X.	Please select
0.07	4e-7	57	Oryza sativa	Os01g0556700	BM038703	-	Dicarboxylate transporter	7e-11	At2g26690	nitrate transporter (NTP2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-3	44	Populus trichocarpa	Ptp.7434.1.A1_s_at	CV256310	hypothetical protein	-	2e-3	At2g16005	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	3e+0	34	Triticum aestivum	Ta.12863.1.S1_at	CD491597	-	-	6e-3	At3g63120	CYCP1	C.G.	S.X.	Please select
0.11	2e-23	109	Vitis vinifera	1610915_at	CF517795	hypothetical protein LOC100268060	-	7e-9	At2g26690	nitrate transporter (NTP2)	C.G.	S.X.	Please select
0.02	5e+0	32	Zea mays	ZmAffx.294.1.A1_at	AI670427	-	-	3e+0	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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