Gene omics information

Query gene ID	Gma.5574.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	78.8	Gma.5574.1.S1_s_at	BI426378	-	-	2e-3	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	S.X.	H.G.	Please select
0.82	91.9	Gma.11238.1.S1_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.67	86.1	Gma.11238.1.S1_a_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.77778.1.S1_at	AW185540	-	-	5e+0	At5g52480	-	S.X.	H.G.	Please select
0.59	79.5	Gma.4927.1.S1_at	BG510284	-	-	7e-3	At4g15236	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select
0.53	74.2	Gma.10455.1.S1_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	S.X.	H.G.	Please select
0.52	73.1	Gma.3107.1.S1_at	BE658900	-	-	1e-97	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	S.X.	H.G.	Please select
0.43	60.6	GmaAffx.93103.1.S1_s_at	CF808828	-	-	5e-3	At4g15236	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.6	98.7	GSM244874	32_CON.I2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
6.6	98.7	GSM171711	6_W.B.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.4	98.6	GSM171639	1_W.F.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.3	98.6	GSM171666	26_V.E.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.0	98.5	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM171616	14_Y.F.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.8	98.4	GSM171653	22_Z.E.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.8	98.4	GSM292274	19_C089.1E.R9E3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM171714	7_V.I.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.5	98.3	GSM171718	8_V.F.I.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.88	0	1086	Gma.5574.1.S1_at	BI426378	-	-	2e-3	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	C.G.	S.X.	Please select
0.33	8e-146	517	GmaAffx.90862.1.A1_at	CF806587	-	-	1e+0	At5g17130	cysteine-type peptidase	C.G.	S.X.	Please select
0.08	1e-8	61	GmaAffx.90300.1.S1_s_at	CF806025	PDR-like ABC-transporter	-	2e-2	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	C.G.	S.X.	Please select
0.08	1e-8	61	GmaAffx.90300.1.S1_at	CF806025	PDR-like ABC-transporter	-	2e-2	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	C.G.	S.X.	Please select
0.10	6e-5	50	Gma.10199.1.A1_at	CD409733	PDR-like ABC-transporter	-	4e-1	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	C.G.	S.X.	Please select
0.08	2e-4	48	Gma.16908.1.S1_at	CA851713	-	-	3e+0	At5g42655	-	C.G.	S.X.	Please select
0.04	9e-4	46	GmaAffx.5080.1.A1_at	BI470448	-	-	2e-7	At1g15210	PDR7 (PLEIOTROPIC DRUG RESISTANCE 7)	C.G.	S.X.	Please select
0.04	9e-4	46	GmaAffx.5080.1.S1_at	BM139978	-	-	9e-1	At3g62340	WRKY68	C.G.	S.X.	Please select
0.06	3e-3	44	GmaAffx.92244.1.S1_at	CF807947	-	-	2e-7	At2g26910	PDR4 (PLEIOTROPIC DRUG RESISTANCE 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-3	44	Arabidopsis thaliana	At1g15520	838122	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	7e-2	38	Hordeum vulgare	Contig13986_at	Contig13986	-	-	4e-33	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	C.G.	S.X.	Please select
0.04	5e-3	44	Oryza sativa	Os09g0332700	9637.m01366	-	-	4e-20	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	2e-13	77	Populus trichocarpa	PtpAffx.144197.1.A1_a_at	DN490048	hypothetical protein	-	2e-3	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	4e-2	40	Triticum aestivum	Ta.4821.1.A1_at	CA670476	-	-	7e-15	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	C.G.	S.X.	Please select
0.20	3e-18	91	Vitis vinifera	1613840_at	BQ800291	ABC transporter-like	-	6e-7	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	C.G.	S.X.	Please select
0.03	1e+0	34	Zea mays	Zm.5691.1.A1_at	AW065747	-	-	7e-4	At3g13850	LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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