CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.5519.3.S1_x_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 91.5 Gma.5519.3.S1_x_at AW459852 - - 6e-37 At5g63790 ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102) S.X. H.G.
0.91 98.6 Gma.5519.3.S1_a_at AW459852 - - 6e-37 At5g63790 ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102) S.X. H.G.
0.80 91.5 Gma.5519.2.S1_at BM188080 - - 8e-19 At1g01720 ATAF1 S.X. H.G.
0.67 86.1 GmaAffx.90028.1.S1_s_at CF805753 - - 3e-1 At1g01720 ATAF1 S.X. H.G.
0.60 80.7 Gma.5519.1.S1_at BI967466 - - 1e-7 At5g08790 ATAF2 S.X. H.G.
0.40 57.1 Gma.10818.2.S1_at AW568786 WRKY78 - 8e-23 At1g80840 WRKY40 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.1 99.5 GSM292208 70_C004.1A.R9A1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.2 99.4 GSM292174 3-1005.1A.R003U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.3 99.3 GSM292164 19_C009.1A.R9A2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.9 99.3 GSM292191 51-C003.1A.R9A1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.5 99.2 GSM292240 49_C033.1B.R9B3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.9 99.2 GSM292210 72-C002.1A.V7A1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.9 99.2 GSM292198 5_C008.1A.V7A2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.8 99.1 GSM292458 58_1257.1G.R164U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.5 99.1 GSM293763 9_3039.2C.R9C1L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.0 99.0 GSM294151 16_3139.2H.R9H3L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.93 0 1247 Gma.5519.3.S1_a_at AW459852 - - 6e-37 At5g63790 ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102) C.G. S.X.
0.28 8e-142 504 Gma.5519.2.S1_at BM188080 - - 8e-19 At1g01720 ATAF1 C.G. S.X.
0.42 8e-71 268 GmaAffx.50673.1.S1_at BF425742 NAC domain protein - 1e-38 At5g08790 ATAF2 C.G. S.X.
0.38 3e-39 163 GmaAffx.50673.2.S1_s_at BI787147 NAC domain protein - 1e-33 At5g08790 ATAF2 C.G. S.X.
0.21 3e-27 123 GmaAffx.92625.1.S1_s_at CF807343 NAC domain protein - 8e-42 At1g01720 ATAF1 C.G. S.X.
0.16 3e-27 123 Gma.4774.1.S1_at AW310386 NAC domain protein - 5e-32 At1g01720 ATAF1 C.G. S.X.
0.20 3e-27 123 Gma.4774.2.S1_at BE807836 NAC domain protein - 9e-45 At1g01720 ATAF1 C.G. S.X.
0.16 3e-24 113 Gma.1750.1.S1_at AI856445 - - 6e-14 At1g01720 ATAF1 C.G. S.X.
0.14 5e-23 109 Gma.16645.1.S1_at BM143429 NAC domain protein - 4e-27 At1g01720 ATAF1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 6e-37 155 Arabidopsis thaliana At5g63790 836499 ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102) Encodes a member of the NAC family of transcription factors. ANAC102 appears to have a role in mediating response to low oxygen stress (hypoxia) in germinating seedlings. - - - C.G. S.X.
0.08 8e-4 44 Hordeum vulgare Contig6233_at Contig6233 - - 3e-8 At5g08790 ATAF2 C.G. S.X.
0.08 6e-17 89 Oryza sativa Os05g0421600 AK107746.1 - Conserved hypothetical protein 3e-18 At1g01720 ATAF1 C.G. S.X.
0.20 1e-17 91 Populus trichocarpa PtpAffx.2179.2.S1_at BP929874 NAC domain protein, IPR003441 - 9e-25 At5g08790 ATAF2 C.G. S.X.
0.10 3e-5 50 Triticum aestivum Ta.5367.1.S1_s_at CK193816 NAC domain transcription factor - 1e-3 At1g01720 ATAF1 C.G. S.X.
0.31 3e-33 141 Vitis vinifera 1609555_at CD719835 hypothetical protein LOC100261123 - 2e-30 At5g08790 ATAF2 C.G. S.X.
0.03 7e-1 34 Zea mays Zm.4376.1.A1_at AI712238 hypothetical protein LOC100275363 - 2e+0 At2g23830 vesicle-associated membrane protein, putative / VAMP, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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