Gene omics information

Query gene ID	Gma.5491.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	80.7	Gma.5491.2.S1_at	BF425401	-	-	3e+0	At5g59570	myb family transcription factor	S.X.	H.G.	Please select
0.81	91.7	GmaAffx.89508.1.A1_s_at	CK606172	-	-	4e-1	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please select
0.80	91.5	GmaAffx.92722.1.S1_at	CF807561	2-hydroxyisoflavanone dehydratase	-	6e-1	At2g30050	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.75	89.5	Gma.4300.3.S1_s_at	AI443042	chalcone synthase	-	1e-5	At5g13930	TT4 (TRANSPARENT TESTA 4)	S.X.	H.G.	Please select
0.74	89.2	Gma.4300.3.S1_x_at	AI443042	chalcone synthase	-	1e-5	At5g13930	TT4 (TRANSPARENT TESTA 4)	S.X.	H.G.	Please select
0.70	87.1	GmaAffx.18616.1.S1_at	BE021154	-	-	7e-3	At4g34540	isoflavone reductase family protein	S.X.	H.G.	Please select
0.69	86.8	Gma.8449.1.S1_s_at	AF002258.1	4-coumarate:Coenzyme A ligase isoenzyme 4 /// 4-coumarate:CoA ligase isoenzyme 3	-	2e-14	At1g65060	4CL3	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.90356.1.S1_s_at	CF806081	-	-	1e-3	At4g13660	PRR2 (PINORESINOL REDUCTASE 2)	S.X.	H.G.	Please select
0.64	83.4	Gma.5491.1.S1_at	AW309940	-	-	1e+1	At5g51105	unknown protein	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.37677.1.S1_s_at	BE022626	HIDH mRNA for 2-hydroxyisoflavanone dehydratase	-	3e-1	At2g30050	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.1	99.3	GSM293802	45_3067.2D.R9D3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.0	99.2	GSM292208	70_C004.1A.R9A1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.6	99.1	GSM294438	92_2469.2J.R237L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.4	99.1	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.1	99.0	GSM294033	83_3105.2F.R9F3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.9	98.8	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.8	98.7	GSM293800	43_2177.2D.R141L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.6	98.7	GSM294704	68_2583.2M.R026L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.6	98.7	GSM292364	35_C097.1F.SLF2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM293820	61_3057.2D.R9D1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	843	Gma.5491.2.S1_a_at	BF425401	-	-	3e+0	At5g59570	myb family transcription factor	C.G.	S.X.	Please select
1.00	0	843	Gma.5491.2.S1_x_at	BF425401	-	-	3e+0	At5g59570	myb family transcription factor	C.G.	S.X.	Please select
0.41	3e-106	385	Gma.5491.1.S1_at	AW309940	-	-	1e+1	At5g51105	unknown protein	C.G.	S.X.	Please select
0.34	4e-68	258	GmaAffx.91013.1.S1_at	CF806738	-	-	5e+0	At5g51105	unknown protein	C.G.	S.X.	Please select
0.34	4e-68	258	GmaAffx.91013.1.S1_s_at	CF806738	-	-	5e+0	At5g51105	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	PsAffx.C54000084_at	PsAffx.C54000084	-	-	5e+0	At5g41685	mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C104000044_at	PsAffx.C104000044	-	-	5e+0	At2g42540	COR15A (COLD-REGULATED 15A)	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.80985.1.S1_at	BQ273729	-	-	4e-25	At1g77420	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.02	1e+0	34	GmaAffx.7874.2.S1_at	AW152996	-	-	2e-1	At4g39780	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At5g59570	836076	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	34	Hordeum vulgare	Contig17639_at	Contig17639	-	-	9e-1	At1g12423	unknown protein	C.G.	S.X.	Please select
0.02	6e+0	32	Oryza sativa	Os09g0421700	AK108547.1	-	Zn-finger, C2H2 type domain containing protein	4e-2	At1g03230	extracellular dermal glycoprotein, putative / EDGP, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-2	40	Populus trichocarpa	Ptp.5216.2.S1_at	CV243764	hypothetical protein	-	4e-1	At4g35733	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-1	34	Triticum aestivum	TaAffx.112944.1.S1_at	CA618740	-	-	4e+0	At3g61560	reticulon family protein (RTNLB6)	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1610070_at	CF205306.1	-	-	3e+0	At5g53780	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Zea mays	Zm.16998.1.A1_at	CK347869	hypothetical protein LOC100193690	-	4e-1	At4g00840	zinc ion binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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