Gene omics information

Query gene ID	Gma.5491.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	82.9	Gma.5491.1.S1_at	AW309940	-	-	1e+1	At5g51105	unknown protein	S.X.	H.G.	Please select
0.90	93.7	GmaAffx.89508.1.A1_s_at	CK606172	-	-	4e-1	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please select
0.87	93.2	Gma.4300.3.S1_s_at	AI443042	chalcone synthase	-	1e-5	At5g13930	TT4 (TRANSPARENT TESTA 4)	S.X.	H.G.	Please select
0.86	93.0	GmaAffx.92722.1.S1_at	CF807561	2-hydroxyisoflavanone dehydratase	-	6e-1	At2g30050	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.83	92.5	Gma.4300.3.S1_x_at	AI443042	chalcone synthase	-	1e-5	At5g13930	TT4 (TRANSPARENT TESTA 4)	S.X.	H.G.	Please select
0.82	91.9	GmaAffx.37677.1.S1_s_at	BE022626	HIDH mRNA for 2-hydroxyisoflavanone dehydratase	-	3e-1	At2g30050	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.78	90.6	Gma.4300.1.S1_s_at	S46989.1	chalcone synthase	-	5e-29	At5g13930	TT4 (TRANSPARENT TESTA 4)	S.X.	H.G.	Please select
0.73	88.9	Gma.8449.1.S1_s_at	AF002258.1	4-coumarate:Coenzyme A ligase isoenzyme 4 /// 4-coumarate:CoA ligase isoenzyme 3	-	2e-14	At1g65060	4CL3	S.X.	H.G.	Please select
0.73	88.9	Gma.2308.1.S1_s_at	AF022462.1	isoflavone synthase 2	-	6e-2	At1g67195	MIR414 (MICRORNA 414)	S.X.	H.G.	Please select
0.67	86.1	Gma.15492.1.S1_s_at	AF276302.1	chalcone isomerase	-	2e+0	At1g52510	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.7	99.0	GSM294272	26_2427.2I.R297L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.6	98.9	GSM293114	29_1139.1O.R087L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.4	98.9	GSM244791	13_SLO.I2W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
7.4	98.9	GSM293535	50_3005.2A.R9A1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.3	98.9	GSM293802	45_3067.2D.R9D3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.3	98.9	GSM292524	39_C137.1H.SLH2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.2	98.9	GSM292510	26_1317.1H.R200L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.1	98.8	GSM171610	13_V.A.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.1	98.8	GSM244934	9_SLO.I2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
7.0	98.8	GSM244910	40_SLO.I3L4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.62	0	1027	GmaAffx.91013.1.S1_at	CF806738	-	-	5e+0	At5g51105	unknown protein	C.G.	S.X.	Please select
0.62	0	1027	GmaAffx.91013.1.S1_s_at	CF806738	-	-	5e+0	At5g51105	unknown protein	C.G.	S.X.	Please select
0.47	2e-149	529	GmaAffx.90414.1.S1_at	CF806139	-	-	4e+0	At5g20500	glutaredoxin, putative	C.G.	S.X.	Please select
0.41	8e-106	385	Gma.5491.2.S1_at	BF425401	-	-	3e+0	At5g59570	myb family transcription factor	C.G.	S.X.	Please select
0.41	8e-106	385	Gma.5491.2.S1_a_at	BF425401	-	-	3e+0	At5g59570	myb family transcription factor	C.G.	S.X.	Please select
0.41	8e-106	385	Gma.5491.2.S1_x_at	BF425401	-	-	3e+0	At5g59570	myb family transcription factor	C.G.	S.X.	Please select
0.02	2e-1	38	GmaAffx.9049.1.A1_at	BU546383	-	-	8e-2	At1g09760	U2A' (U2 small nuclear ribonucleoprotein A)	C.G.	S.X.	Please select
0.02	2e-1	38	GmaAffx.9049.1.S1_at	BU546383	-	-	8e-2	At1g09760	U2A' (U2 small nuclear ribonucleoprotein A)	C.G.	S.X.	Please select
0.03	9e-1	36	PsAffx.psMA010xD09f_at	PsAffx.psMA010xD09f	-	-	1e+0	At1g07985	Expressed protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+1	32	Arabidopsis thaliana	At5g51105	835184	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-9	61	Hordeum vulgare	Contig11163_s_at	Contig11163	-	-	2e+0	At1g26800	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	3e-10	67	Oryza sativa	Os10g0576900	AK064038.1	-	Conserved hypothetical protein	6e-1	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	1e-18	95	Populus trichocarpa	PtpAffx.30128.1.S1_at	CV244941	hypothetical protein	-	3e+0	At2g23910	cinnamoyl-CoA reductase-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-8	61	Triticum aestivum	Ta.10648.1.S1_x_at	BQ166184	-	-	2e-1	At4g30470	cinnamoyl-CoA reductase-related	C.G.	S.X.	Please select
0.16	2e-35	149	Vitis vinifera	1619065_at	CB972322	hypothetical protein LOC100253987	-	1e-2	At4g30470	cinnamoyl-CoA reductase-related	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.11972.1.A1_at	BM382270	-	-	6e-2	At3g29690	transferase-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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