CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.5368.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 80.7 Gma.5368.1.S1_at BQ627877 - - 2e-30 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) S.X. H.G.
0.71 87.8 Gma.6353.1.S1_at AI960028 - - 1e-4 At1g67250 proteasome maturation factor UMP1 family protein S.X. H.G.
0.67 86.1 Gma.2954.1.S1_at CD404770 - - 4e-34 At5g55160 SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2) S.X. H.G.
0.61 81.8 Gma.10826.5.S1_x_at BM732455 - - 2e-108 At5g55190 RAN3 (RAN GTPASE 3) S.X. H.G.
0.30 40.4 Gma.11256.1.S1_at CD401123 - - 7e-28 At1g56450 PBG1 S.X. H.G.
0.29 39.0 Gma.17905.2.S1_at CD393233 - - 8e-37 At4g01320 ATSTE24 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.2 96.0 GSM293097 13_1105.1O.R066L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM293581 13_2067.2B.R163L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7 94.8 GSM292183 43-C017.1A.R9A3U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6 94.5 GSM293615 44_2051.2B.R038L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4 93.8 GSM293539 54_3007.2A.SLA2U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3 93.3 GSM294022 73_2244.2F.R060P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3 93.3 GSM293145 57_1111.1O.R071L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3 93.3 GSM293099 15_1129.1O.R082L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3 93.3 GSM293123 37_1111.1O.R071U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2 92.8 GSM293332 21_1565.1Q.R153L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 PsAffx.C61000026_at PsAffx.C61000026 - - 4e+0 At1g44750 ATPUP11 C.G. S.X.
0.02 2e+0 34 PsAffx.C61000024_at PsAffx.C61000024 - - 9e-3 At3g48020 - C.G. S.X.
0.01 2e+0 34 GmaAffx.4391.1.S1_at BG654256 - - 1e-73 At3g19760 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative C.G. S.X.
0.01 2e+0 34 GmaAffx.23798.1.S1_at AW348327 - - 2e-10 At1g59600 ZCW7 C.G. S.X.
0.03 2e+0 34 Gma.8132.1.A1_at BU548534 - - 1e+0 At4g21100 DDB1B (Damaged DNA Binding Protein 1 B) C.G. S.X.
0.01 9e+0 32 PsAffx.C81000057_s_at PsAffx.C81000057 - - 4e-1 At3g58420 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.01 9e+0 32 PsAffx.C6000137_at PsAffx.C6000137 - - 3e+0 At5g05370 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative C.G. S.X.
0.01 9e+0 32 PsAffx.C5000188_at PsAffx.C5000188 - - 3e-2 At1g12665 - C.G. S.X.
0.01 9e+0 32 PsAffx.C152000025_at PsAffx.C152000025 - - 5e+0 At5g50335 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 2e-30 133 Arabidopsis thaliana At5g05780 830463 RPN8A (RP NON-ATPASE SUBUNIT 8A) Encodes a putative 26S proteasome subunit RPN8a. The function of RPN8a and other 26S subunits may be required for specifying leaf adaxial identity. - - - C.G. S.X.
0.30 2e-35 149 Hordeum vulgare Contig3557_at Contig3557 - - 3e-68 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) C.G. S.X.
0.28 4e-15 83 Oryza sativa Os04g0661900 AK103551.1 - - 8e-44 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) C.G. S.X.
0.37 1e-66 254 Populus trichocarpa Ptp.1315.1.S1_at CV267551 hypothetical protein - 2e-108 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) C.G. S.X.
0.28 5e-25 115 Triticum aestivum Ta.2207.1.S1_at CK200975 - - 2e-56 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) C.G. S.X.
0.27 1e-81 301 Vitis vinifera 1612915_at CF212348 hypothetical protein LOC100247677 - 8e-115 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) C.G. S.X.
0.11 8e-16 83 Zea mays Zm.477.2.A1_at AI737865 hypothetical protein LOC100274928 - 2e-75 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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