CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.5350.1.S1_s_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 81.8 Gma.5350.1.S1_s_at AW351218 - - 6e-18 At5g60460 sec61beta family protein S.X. H.G.
0.69 86.8 Gma.2904.1.S1_at BG651469 - - 1e-1 At3g43520 unknown protein S.X. H.G.
0.69 86.8 GmaAffx.91136.1.S1_s_at CF806861 - - 2e-36 At5g19510 elongation factor 1B alpha-subunit 2 (eEF1Balpha2) S.X. H.G.
0.61 81.8 Gma.7245.1.S1_at AW351310 - - 3e-35 At4g35490 MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) S.X. H.G.
0.60 80.7 Gma.18017.2.S1_s_at CD406719 - - 6e-21 At1g69620 RPL34 (RIBOSOMAL PROTEIN L34) S.X. H.G.
0.55 76.3 GmaAffx.90455.1.A1_s_at CF806180 - - 3e-26 At5g12110 elongation factor 1B alpha-subunit 1 (eEF1Balpha1) S.X. H.G.
0.54 74.8 GmaAffx.80265.1.S1_at BU761569 - - 3e-31 At1g17350 auxin-induced-related / indole-3-acetic acid induced-related S.X. H.G.
0.47 66.6 Gma.11048.1.S1_at AW309369 - - 2e-40 At1g09690 60S ribosomal protein L21 (RPL21C) S.X. H.G.
0.46 65.5 Gma.4710.1.S1_x_at AW317168 - - 2e-21 At5g18380 40S ribosomal protein S16 (RPS16C) S.X. H.G.
0.43 60.6 Gma.11262.1.S1_at CD415864 - - 2e-27 At4g26230 60S ribosomal protein L31 (RPL31B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.9 99.8 GSM309341 Wild type 1 GSE12300 Suppression of oleosin in soybean cotyledon
20.6 99.7 GSM309343 transgenic RNAiOleosin, biol rep 1, tech rep 1 GSE12300 Suppression of oleosin in soybean cotyledon
20.3 99.7 GSM309528 storage protein suppression expt, control tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
17.9 99.7 GSM309342 Wild type 2 GSE12300 Suppression of oleosin in soybean cotyledon
17.6 99.7 GSM309344 transgenic RNAiOleosin, biol rep 1, tech rep 2 GSE12300 Suppression of oleosin in soybean cotyledon
16.9 99.7 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
16.8 99.7 GSM309527 storage protein suppression expt, control tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
15.7 99.6 GSM309345 transgenic RNAiOleosin, biol rep 2, tech rep 1 GSE12300 Suppression of oleosin in soybean cotyledon
15.3 99.6 GSM309346 transgenic RNAiOleosin, biol rep 2, tech rep 2 GSE12300 Suppression of oleosin in soybean cotyledon
13.6 99.5 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.72 2e-175 615 PsAffx.psHB008xG14f_at PsAffx.psHB008xG14f - - 3e-23 At5g60460 sec61beta family protein C.G. S.X.
0.03 7e-3 42 PsAffx.C384000005_at PsAffx.C384000005 - - 5e-1 At4g29650 cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase C.G. S.X.
0.02 4e-1 36 PsAffx.C4000101_at PsAffx.C4000101 - - 4e-2 At4g13615 four F5 protein-related / 4F5 protein-related C.G. S.X.
0.03 2e+0 34 PsAffx.C948000001_at PsAffx.C948000001 - - 7e+0 At3g63420 AGG1 (Arabidopsis Ggamma-subunit 1) C.G. S.X.
0.03 2e+0 34 PsAffx.C9000152_s_at PsAffx.C9000152 - - 2e+0 At3g63420 AGG1 (Arabidopsis Ggamma-subunit 1) C.G. S.X.
0.04 2e+0 34 PsAffx.C3000200_at PsAffx.C3000200 - - 1e+1 At5g67510 60S ribosomal protein L26 (RPL26B) C.G. S.X.
0.01 2e+0 34 PsAffx.C282000007_at PsAffx.C282000007 - - 4e-2 At3g01500 CA1 (CARBONIC ANHYDRASE 1) C.G. S.X.
0.01 2e+0 34 PsAffx.C155000017_at PsAffx.C155000017 - - 5e+0 At3g06700 60S ribosomal protein L29 (RPL29A) C.G. S.X.
0.03 2e+0 34 PsAffx.C155000019_at PsAffx.C155000019 - - 6e+0 At5g37670 15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 6e-18 91 Arabidopsis thaliana At5g60460 836167 sec61beta family protein F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB - - - C.G. S.X.
0.17 1e-17 89 Hordeum vulgare Contig5466_s_at Contig5466 - - 3e-4 At5g60460 sec61beta family protein C.G. S.X.
0.12 4e-11 69 Oryza sativa Os12g0103300 AU222596 - Protein transport protein SEC61 beta subunit 4e-3 At5g60460 sec61beta family protein C.G. S.X.
0.20 5e-4 46 Populus trichocarpa PtpAffx.18075.1.S1_at CV278430 - - 2e-12 At5g60460 sec61beta family protein C.G. S.X.
0.17 1e-19 97 Triticum aestivum Ta.13162.1.S1_at CK200289 - - 5e-4 At5g60460 sec61beta family protein C.G. S.X.
0.15 3e-17 87 Vitis vinifera 1622732_at CF372633 hypothetical protein LOC100247887 - 3e-10 At5g60460 sec61beta family protein C.G. S.X.
0.20 4e-17 87 Zea mays Zm.16986.1.S1_at CF632581 protein transport protein Sec61 beta subunit - 2e-2 At5g60460 sec61beta family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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