Gene omics information

Query gene ID	Gma.5276.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.3	Gma.5276.1.S1_at	BM731770	-	-	8e-36	At4g13430	IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)	S.X.	H.G.	Please select
0.80	91.5	Gma.4917.1.S1_at	BI969807	-	-	6e-20	At1g04940	TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)	S.X.	H.G.	Please select
0.73	88.9	Gma.6940.1.A1_at	CA784222	-	-	5e+0	At2g39320	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.81837.1.S1_at	CD410469	-	-	5e-81	At4g17040	ATP-dependent Clp protease proteolytic subunit, putative	S.X.	H.G.	Please select
0.60	80.7	Gma.7729.2.S1_at	CD403163	-	-	4e-27	At2g43950	OEP37	S.X.	H.G.	Please select
0.60	80.7	Gma.16782.1.S1_at	CD412337	-	-	2e-41	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.2	99.7	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
18.6	99.7	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
14.3	99.6	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
14.2	99.6	GSM209589	resistant_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
14.0	99.6	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
12.7	99.5	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
12.2	99.5	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
12.2	99.5	GSM238034	Soybean-2601R-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
11.7	99.4	GSM238053	Soybean-PS46R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
11.3	99.4	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	GmaAffx.26030.1.A1_at	BU545898	-	-	1e+0	At5g50740	metal ion binding	C.G.	S.X.	Please select
0.02	5e-1	36	Gma.3254.2.S1_at	CD391904	-	-	3e-9	At3g02440	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	PsAffx.psMA014xJ11f_at	PsAffx.psMA014xJ11f	-	-	1e+0	At1g34840	-	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C69000063_at	PsAffx.C69000063	-	-	3e+0	At1g05860	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C54000093_at	PsAffx.C54000093	-	-	3e+1	At5g19473	-	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C45000090_at	PsAffx.C45000090	-	-	6e-4	At1g55080	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	34	GmaAffx.9174.2.S1_at	CA785475	-	-	1e-15	At2g28940	protein kinase family protein	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.72674.1.S1_at	BG362784	-	-	4e-26	At2g04280	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.69027.1.S1_at	BM271256	-	-	3e-1	At4g22217	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	8e-36	151	Arabidopsis thaliana	At4g13430	826975	IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)	F:4 iron, 4 sulfur cluster binding, lyase activity, hydro-lyase activity;P:response to cadmium ion, metabolic process;C:chloroplast stroma, chloroplast;OBFMAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	8e-50	196	Hordeum vulgare	Contig5567_s_at	Contig5567	-	-	8e-35	At4g13430	IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)	C.G.	S.X.	Please select
0.17	6e-35	149	Oryza sativa	Os02g0125100	AK101889.1	-	Cis-homoaconitase family protein	1e-24	At4g13430	IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.41	1e-66	254	Populus trichocarpa	PtpAffx.22099.2.A1_s_at	CN519960	hypothetical protein	-	4e-63	At4g13430	IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	TaAffx.27615.1.S1_at	CA673234	-	-	4e+0	At4g19980	unknown protein	C.G.	S.X.	Please select
0.36	2e-49	194	Vitis vinifera	1614680_at	CB916405	-	-	2e-46	At4g13430	IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)	C.G.	S.X.	Please select
0.17	6e-47	186	Zea mays	Zm.12697.1.S1_at	CF060279	hypothetical protein LOC100193712	-	5e-24	At4g13430	IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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