CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.5244.3.S1_a_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 87.8 Gma.5244.3.S1_a_at BM893397 - - 1e-32 At2g32080 PUR ALPHA-1 S.X. H.G.
0.59 79.5 Gma.1278.1.S1_a_at BE020433 - - 4e-20 At1g03900 ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4) S.X. H.G.
0.46 65.5 GmaAffx.93393.1.S1_s_at CF808604 ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2 - 6e-22 At1g07890 APX1 (ascorbate peroxidase 1) S.X. H.G.
0.44 63.3 GmaAffx.84688.1.S1_at AI460889 - - 5e-24 At4g14240 - S.X. H.G.
0.30 40.4 GmaAffx.59019.1.S1_at AW133348 - - 1e-136 Atmg00160 - S.X. H.G.
0.21 26.6 Gma.11202.1.S1_s_at AW309575 - - 3e-20 At1g27310 NTF2A (NUCLEAR TRANSPORT FACTOR 2A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.8 97.9 GSM244916 4_SLO.I3U1.CEL, Experimental replicate 1 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.7 96.8 GSM293310 91_1180.1P.R110P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293525 41_2019.2A.R192L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM293307 89_1202.1P.R124P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM293246 33_1241.1P.R148U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6 94.5 GSM293795 39_3055.2D.SLD1U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5 94.2 GSM293250 37_C061.1P.SLP2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5 94.2 GSM244807 17_CON.M2W3.CEL, Experimental replicate 3 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
2.5 94.2 GSM293767 13_2151.2D.R012L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5 94.2 GSM293350 38_1569.1Q.R157U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.78 0 1421 GmaAffx.93138.1.S1_s_at CF808863 - - 2e-27 At2g32080 PUR ALPHA-1 C.G. S.X.
0.32 2e-168 593 Gma.5244.2.S1_at CD415693 - - 1e-22 At2g32080 PUR ALPHA-1 C.G. S.X.
0.01 2e-1 38 PsAffx.C3000163_at PsAffx.C3000163 - - 3e+0 At5g40440 ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3) C.G. S.X.
0.01 8e-1 36 PsAffx.C47000035_at PsAffx.C47000035 - - 4e+0 At3g04360 - C.G. S.X.
0.01 8e-1 36 PsAffx.C193000007_at PsAffx.C193000007 - - 7e-2 At3g15210 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) C.G. S.X.
0.01 8e-1 36 PsAffx.C12000001_at PsAffx.C12000001 - - 4e+0 At5g54095 unknown protein C.G. S.X.
0.01 8e-1 36 PsAffx.C118000007_at PsAffx.C118000007 - - 1e+0 At1g75190 unknown protein C.G. S.X.
0.01 3e+0 34 PsAffx.CL746Contig1_at PsAffx.CL746Contig1 - - 1e-1 At5g27370 unknown protein C.G. S.X.
0.01 3e+0 34 PsAffx.C6000163_at PsAffx.C6000163 - - 9e-1 At5g42900 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 1e-32 141 Arabidopsis thaliana At2g32080 817768 PUR ALPHA-1 similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication - - - C.G. S.X.
0.24 4e-31 135 Hordeum vulgare Contig7564_at Contig7564 - - 4e-5 At2g32080 PUR ALPHA-1 C.G. S.X.
0.31 7e-33 143 Oryza sativa Os01g0260700 CB659887 - PUR-alpha/beta/gamma, DNA/RNA-binding familyprotein 3e-12 At2g32080 PUR ALPHA-1 C.G. S.X.
0.40 3e-80 299 Populus trichocarpa PtpAffx.134857.1.S1_at CX185540 hypothetical protein - 2e-43 At2g32080 PUR ALPHA-1 C.G. S.X.
0.29 6e-35 149 Triticum aestivum Ta.4232.1.S1_s_at CK169440 - - 5e-5 At2g32080 PUR ALPHA-1 C.G. S.X.
0.26 8e-56 216 Vitis vinifera 1618360_at CF204032.1 - - 5e-13 At2g32080 PUR ALPHA-1 C.G. S.X.
0.24 6e-30 131 Zea mays Zm.2102.1.A1_at AW267527 hypothetical protein LOC100274069 - 3e-3 At2g32080 PUR ALPHA-1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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