Gene omics information

Query gene ID	Gma.5237.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.5237.1.S1_at	BQ298220	-	-	8e-10	At3g55960	NLI interacting factor (NIF) family protein	S.X.	H.G.	Please select
0.55	76.3	Gma.10860.1.S1_a_at	AW350087	-	-	9e-13	At4g19860	lecithin:cholesterol acyltransferase family protein / LACT family protein	S.X.	H.G.	Please select
0.50	71.7	Gma.15087.1.S1_at	BI968833	-	-	5e+0	At1g01530	AGL28 (AGAMOUS-LIKE 28)	S.X.	H.G.	Please select
0.50	71.7	Gma.12076.1.S1_at	CD410539	-	-	1e-45	At4g31860	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.661.1.S1_at	BI969786	-	-	2e+0	At1g67080	ABA4 (abscisic acid (ABA)-deficient 4)	S.X.	H.G.	Please select
0.23	29.9	Gma.1651.1.S1_at	CD395076	-	-	4e-1	At3g17880	ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	98.5	GSM293126	3_C038.1O.R9O1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM292890	65_C202.1L.R9L1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM293105	20_C054.1O.R9O3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM209579	susceptible_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.0	97.2	GSM292959	38_C232.1M.R9M3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM292278	22_C090.1E.R9E3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM292887	62_1458.1L.R279P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM292917	8_C216.1L.R9L3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293616	45_3030.2B.R9B2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292258	78_C034.1B.R9B3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	2e-109	397	Gma.5237.2.S1_at	BI423744	-	-	5e-6	At3g55960	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please select
0.21	4e-37	157	GmaAffx.59427.1.S1_at	BE821999	-	-	3e-3	At3g55960	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please select
0.01	2e-1	38	PsAffx.C6000126_at	PsAffx.C6000126	-	-	1e-2	At1g60030	xanthine/uracil permease family protein	C.G.	S.X.	Please select
0.01	1e+0	36	PsAffx.C42000014_at	PsAffx.C42000014	-	-	7e-2	At1g66690	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C60000022_at	PsAffx.C60000022	-	-	1e+0	At3g15359	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C137000019_at	PsAffx.C137000019	-	-	5e-2	At1g64010	serpin, putative / serine protease inhibitor, putative	C.G.	S.X.	Please select
0.02	4e+0	34	HgAffx.15990.1.S1_at	CB374152	-	-	4e+0	At2g34740	catalytic/ protein serine/threonine phosphatase	C.G.	S.X.	Please select
0.02	4e+0	34	GmaAffx.90411.1.S1_x_at	CF806136	-	-	2e-32	At3g51160	MUR1 (MURUS 1)	C.G.	S.X.	Please select
0.02	4e+0	34	GmaAffx.90411.1.S1_s_at	CF806136	-	-	2e-32	At3g51160	MUR1 (MURUS 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	8e-10	65	Arabidopsis thaliana	At3g55960	824762	NLI interacting factor (NIF) family protein	F:phosphatase activity;P:biological_process unknown;C:unknown;MOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-6	54	Hordeum vulgare	Contig15966_at	Contig15966	-	-	1e-1	At3g55960	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please select
0.15	9e-5	50	Oryza sativa	Os01g0833100	AK068946.1	-	NLI interacting factor domain containing protein	8e-7	At3g55960	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	4e-108	393	Populus trichocarpa	PtpAffx.9973.1.S1_at	DN501731	hypothetical protein	-	3e-34	At3g55960	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	7e-1	36	Triticum aestivum	Ta.13449.1.A1_at	BJ247307	-	-	2e-1	At2g37770	aldo/keto reductase family protein	C.G.	S.X.	Please select
0.35	7e-66	250	Vitis vinifera	1618620_at	CF403144	hypothetical protein LOC100262172	-	5e-10	At3g55960	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please select
0.04	1e+0	34	Zea mays	Zm.10380.1.S1_at	AY109011.1	hypothetical protein LOC100216776	-	8e-7	At3g55960	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage