CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.5103.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.42 59.3 Gma.5103.1.S1_at BI968925 - - 2e-59 At1g80500 - S.X. H.G.
0.43 60.6 GmaAffx.60847.1.A1_at BU550307 - - 7e-15 At5g38630 ACYB-1 S.X. H.G.
0.40 57.1 GmaAffx.86632.1.S1_at BI320306 - - 9e-2 At5g53045 - S.X. H.G.
0.38 53.3 GmaAffx.82169.1.S1_at BQ252939 - - 1e-3 At4g01710 CRK (CROOKED) S.X. H.G.
0.36 50.8 Gma.3521.1.S1_at CF920340 - - 1e-47 At2g32520 dienelactone hydrolase family protein S.X. H.G.
0.33 46.1 Gma.1863.1.S1_at CA819577 - - 4e-11 At5g37510 EMB1467 (embryo defective 1467) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.5 96.6 GSM293566 79_2005.2A.R146L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5 96.6 GSM238055 Soybean-PS46R-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.4 96.4 GSM293601 31_2069.2B.R213L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293363 4_1555.1Q.R121U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM258502 Vegetative shoot apical meristem, replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.1 95.8 GSM209598 resistant_48hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.0 95.6 GSM293333 22_1549.1Q.R078L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9 95.4 GSM293593 24_2082.2B.R035P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM293613 42_2054.2B.R307P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM293381 66_C087.1Q.V7Q3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.99 0 1784 Gma.5103.1.S1_a_at BI968925 - - 2e-59 At1g80500 - C.G. S.X.
0.53 2e-108 393 Gma.5103.2.A1_at CD391438 - - 1e-21 At1g80500 - C.G. S.X.
0.03 2e-1 38 GmaAffx.64934.1.S1_at AW317717 - - 2e-1 At4g39675 unknown protein C.G. S.X.
0.02 2e-1 38 Gma.7430.1.A1_at BE824203 - - 7e-15 At5g13210 - C.G. S.X.
0.03 6e-1 36 GmaAffx.8472.2.S1_at BE822322 - - 1e-6 At3g01300 protein kinase, putative C.G. S.X.
0.02 6e-1 36 GmaAffx.72251.1.S1_at BF070887 - - 1e+0 At5g14000 anac084 (Arabidopsis NAC domain containing protein 84) C.G. S.X.
0.02 6e-1 36 Gma.12424.1.S1_s_at AW706222 - - 3e-2 At3g27010 AT-TCP20 C.G. S.X.
0.02 6e-1 36 Gma.12428.2.S1_at CD408301 - - 5e+0 At3g62050 - C.G. S.X.
0.02 6e-1 36 Gma.12428.1.S1_a_at BI426385 - - 2e-28 At4g25680 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 2e-59 230 Arabidopsis thaliana At1g80500 844389 - F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOP - - - C.G. S.X.
0.15 9e-7 54 Hordeum vulgare Contig8856_s_at Contig8856 - - 8e-18 At1g80500 - C.G. S.X.
0.22 2e-11 71 Oryza sativa Os02g0613600 AK071179.1 - Sedlin (Trafficking protein particle complexprotein 2) 7e-6 At1g80500 - C.G. S.X.
0.38 8e-53 208 Populus trichocarpa PtpAffx.32818.1.S1_at AJ773479 hypothetical protein - 5e-53 At1g80500 - C.G. S.X.
0.24 1e-10 67 Triticum aestivum Ta.5609.1.S1_at BJ249419 - - 3e-8 At1g80500 - C.G. S.X.
0.28 7e-22 103 Vitis vinifera 1608842_at CD800895 - - 4e-41 At1g80500 - C.G. S.X.
0.19 2e-16 85 Zea mays Zm.2979.1.S1_at BG841486 trafficking protein particle complex protein 2 - 2e-12 At1g80500 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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