CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.5040.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 87.8 Gma.5040.1.S1_at BI970582 - - 1e-7 At5g61140 DEAD box RNA helicase, putative S.X. H.G.
0.53 74.2 Gma.3926.1.S1_at BE801733 - - 2e-38 At1g04080 PRP39 S.X. H.G.
0.50 71.7 Gma.6024.1.S1_s_at CD397288 - - 5e-1 At5g41290 receptor-like protein kinase-related S.X. H.G.
0.36 50.8 Gma.3765.1.S1_at BI892781 - - 2e-10 At1g59820 ALA3 (Aminophospholipid ATPase3) S.X. H.G.
0.27 35.7 GmaAffx.51562.1.S1_at BE822242 - - 4e-1 At5g67390 unknown protein S.X. H.G.
0.23 29.9 Gma.2802.1.S1_at CD396311 - - 2e-29 At3g06810 IBR3 (IBA-RESPONSE 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.2 98.1 GSM292373 47_C104.1F.R9F3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1 98.1 GSM293215 95_C050.1O.SLO3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7 97.8 GSM292315 63_C080.1E.R9E2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5 97.7 GSM292278 22_C090.1E.R9E3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2 97.4 GSM292211 74-C018.1A.R9A3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM292922 94_1463.1L.R282U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM292279 23_C078.1E.SLE1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8 97.0 GSM294219 6_2368.2H.R229P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8 97.0 GSM292575 85_C136.1H.R9H2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7 96.8 GSM292839 19_C199.1L.V7L1U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-2 40 GmaAffx.61427.1.A1_at CD399540 - - 3e+0 At5g13180 ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83) C.G. S.X.
0.02 6e-1 36 GmaAffx.88533.1.S1_at CA850742 - - 2e-9 At1g27290 unknown protein C.G. S.X.
0.02 6e-1 36 GmaAffx.50328.1.S1_at BE024012 - - 3e-5 At5g16110 unknown protein C.G. S.X.
0.03 6e-1 36 GmaAffx.4508.1.S1_at BI316036 - - 1e-2 At2g30560 glycine-rich protein C.G. S.X.
0.03 6e-1 36 Gma.5776.1.S1_at AW348874 - - 6e-2 At5g61660 glycine-rich protein C.G. S.X.
0.02 6e-1 36 Gma.2112.1.S1_at AW309814 - - 3e-2 At4g22810 DNA-binding protein-related C.G. S.X.
0.03 2e+0 34 GmaAffx.83424.1.A1_at BU544247 - - 2e-1 At1g08760 unknown protein C.G. S.X.
0.03 2e+0 34 Gma.895.2.S1_at AW164361 - - 3e-10 At3g29035 ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3) C.G. S.X.
0.03 2e+0 34 Gma.5283.1.S1_at BM091956 - - 8e-1 At5g41950 binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-7 57 Arabidopsis thaliana At5g61140 836235 DEAD box RNA helicase, putative Encodes a predicted protein with 30% identity with MER3/RCK. - - - C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig21914_at Contig21914 - - 5e-2 At1g64130 unknown protein C.G. S.X.
0.02 2e-1 38 Oryza sativa Os11g0587450 9639.m03412 - - 2e+0 At4g04800 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein C.G. S.X.
0.16 6e-4 46 Populus trichocarpa Ptp.631.1.S1_at CK088725 - - 1e-10 At5g61140 DEAD box RNA helicase, putative C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.84323.1.S1_at CA639611 - - 4e+0 At1g47700 unknown protein C.G. S.X.
0.17 9e-15 79 Vitis vinifera 1621044_at CB004222 - - 8e-18 At5g61140 DEAD box RNA helicase, putative C.G. S.X.
0.03 7e-1 34 Zea mays ZmAffx.68.1.A1_at AI665143 - - 8e-1 At2g22290 ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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