Gene omics information

Query gene ID	Gma.5038.3.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.5038.3.S1_s_at	AW830151	-	-	2e-9	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	S.X.	H.G.	Please select
0.19	23.7	GmaAffx.24396.1.A1_at	BU547464	-	-	1e-16	At3g55260	HEXO1 (BETA-HEXOSAMINIDASE 1)	S.X.	H.G.	Please select
0.10	13.0	GmaAffx.59019.1.S1_at	AW133348	-	-	1e-136	Atmg00160	-	S.X.	H.G.	Please select
0.06	9.0	GmaAffx.93393.1.S1_s_at	CF808604	ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2	-	6e-22	At1g07890	APX1 (ascorbate peroxidase 1)	S.X.	H.G.	Please select
0.06	9.0	Gma.7259.2.S1_at	BQ610944	-	-	7e+0	At5g45428	CPuORF24 (Conserved peptide upstream open reading frame 24)	S.X.	H.G.	Please select
0.05	8.0	GmaAffx.74451.1.A1_at	BU548027	-	-	5e-9	At3g10410	scpl49 (serine carboxypeptidase-like 49)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.1	98.8	GSM293584	16_2089.2B.R181U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2	98.6	GSM244854	28_SLO.I3U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.6	98.3	GSM244935	9_SLO.M1W3.CEL, Experimental replicate 3	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.4	98.2	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.0	98.0	GSM292566	77_1319.1H.R201U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM244904	39_V71.M1W3.CEL, Experimental replicate 3	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.7	97.8	GSM293491	10_3002.2A.SLA1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM170924	V2 Control, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
4.6	97.7	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.6	97.7	GSM293586	18_2092.2B.R298P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	0	660	GmaAffx.93307.1.S1_at	CF809032	-	-	1e+0	At5g26890	unknown protein	C.G.	S.X.	Please select
0.45	5e-180	630	Gma.5038.2.S1_a_at	CD417606	-	-	1e-4	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	C.G.	S.X.	Please select
0.45	5e-180	630	Gma.5038.2.S1_at	CD417606	-	-	1e-4	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	C.G.	S.X.	Please select
0.08	6e-22	105	Gma.5038.1.A1_at	BE023631	-	-	4e-4	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	C.G.	S.X.	Please select
0.02	1e-1	38	Gma.4928.1.S1_a_at	AF002259.1	4-coumarate:CoA ligase isoenzyme 2	-	4e-9	At1g51680	4CL1 (4-COUMARATE:COA LIGASE 1)	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C32000007_s_at	PsAffx.C32000007	-	-	2e-1	At4g03153	kinase interacting family protein	C.G.	S.X.	Please select
0.00	5e-1	36	PsAffx.C125000011_s_at	PsAffx.C125000011	-	-	4e+0	At4g27370	VIIIB	C.G.	S.X.	Please select
0.03	5e-1	36	HgAffx.24257.1.S1_at	BF013592	-	-	4e+0	At2g32600	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.04	5e-1	36	GmaAffx.8427.1.S1_at	BF070252	-	-	9e-3	At5g38590	F-box family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-9	63	Arabidopsis thaliana	At5g63380	836457	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	1e-17	89	Hordeum vulgare	Contig16738_at	Contig16738	-	-	2e-3	At1g20510	OPCL1 (OPC-8:0 COA LIGASE1)	C.G.	S.X.	Please select
0.05	1e-2	42	Oryza sativa	OsAffx.24570.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.31	2e-52	206	Populus trichocarpa	PtpAffx.13512.1.S1_s_at	CV258935	4-coumarate-coa ligase	-	9e-12	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	6e-6	52	Triticum aestivum	TaAffx.97935.1.S1_at	BQ801609	-	-	4e-4	At1g20510	OPCL1 (OPC-8:0 COA LIGASE1)	C.G.	S.X.	Please select
0.29	9e-61	232	Vitis vinifera	1610552_at	CF201894.1	-	-	5e-10	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	C.G.	S.X.	Please select
0.09	9e-3	40	Zea mays	Zm.777.1.S1_a_at	CD442368	hypothetical protein LOC100272376	-	4e-8	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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