Gene omics information

Query gene ID	Gma.4995.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.78	90.6	Gma.4995.2.S1_at	AW830184	-	-	3e-4	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.51799.1.S1_at	BU761785	-	-	8e-1	At1g13740	AFP2 (ABI FIVE BINDING PROTEIN 2)	S.X.	H.G.	Please select
0.47	66.6	Gma.867.1.S1_at	AI442971	-	-	4e-27	At1g01160	SSXT protein-related / transcription co-activator-related	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.90745.1.S1_s_at	CF806470	-	-	4e+0	At5g42235	Expressed protein	S.X.	H.G.	Please select
0.46	65.5	Gma.1651.1.S1_at	CD395076	-	-	4e-1	At3g17880	ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)	S.X.	H.G.	Please select
0.40	57.1	Gma.867.2.S1_a_at	BU927510	-	-	8e-30	At4g00850	GIF3 (GRF1-INTERACTING FACTOR 3)	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.34491.1.S1_at	BE820865	-	-	9e-13	At1g16360	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein	S.X.	H.G.	Please select
0.32	43.7	GmaAffx.22482.1.S1_x_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.7	98.4	GSM293307	89_1202.1P.R124P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM292178	34-1006.1A.R003P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM293557	70_2036.2A.R165P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM293247	34_C066.1P.R9P2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM292768	30_C198.1K.R9K3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293491	10_3002.2A.SLA1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM293289	72_1238.1P.R145P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292825	82_C184.1K.R9K1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	GmaAffx.92192.1.S1_s_at	CF806406	-	-	3e-4	At2g35960	NHL12	C.G.	S.X.	Please select
0.05	1e-1	38	Gma.6984.3.S1_a_at	BG839604	-	-	9e-7	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	C.G.	S.X.	Please select
0.02	1e-1	38	Gma.6075.2.S1_at	AW156706	-	-	6e-4	At2g35960	NHL12	C.G.	S.X.	Please select
0.01	4e-1	36	PsAffx.C100000011_at	PsAffx.C100000011	-	-	4e+0	At5g23220	NIC3 (NICOTINAMIDASE 3)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C11000007_s_at	PsAffx.C11000007	-	-	4e+0	At5g14380	AGP6 (Arabinogalactan proteins 6)	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.67673.1.S1_at	BF324382	-	-	1e-19	At2g37160	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.6075.1.S1_a_at	AW317183	-	-	2e-9	At5g06330	hairpin-responsive protein, putative (HIN1)	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.6075.1.S1_s_at	AW317183	-	-	2e-9	At5g06330	hairpin-responsive protein, putative (HIN1)	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.6075.1.S1_at	AW317183	-	-	2e-9	At5g06330	hairpin-responsive protein, putative (HIN1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	3e-4	46	Arabidopsis thaliana	At5g13020	831142	emsy N terminus domain-containing protein / ENT domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	34	Hordeum vulgare	Contig25889_at	Contig25889	-	-	3e+0	At2g34530	unknown protein	C.G.	S.X.	Please select
0.02	2e-3	44	Oryza sativa	Os02g0100800	AK062555.1	-	Hypothetical protein	6e-1	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	2e-21	103	Populus trichocarpa	PtpAffx.216633.1.S1_x_at	pmrna31544	hypothetical protein	-	8e-19	At2g44440	emsy N terminus domain-containing protein / ENT domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+0	34	Triticum aestivum	Ta.6107.2.S1_a_at	BJ293205	-	-	6e-1	At4g15470	-	C.G.	S.X.	Please select
0.10	1e-10	65	Vitis vinifera	1614103_at	CF515571	hypothetical protein LOC100257061	-	2e-2	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	ZmAffx.428.1.A1_at	AI676868	hypothetical protein LOC100193500	-	2e-1	At3g18630	uracil DNA glycosylase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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