Gene omics information

Query gene ID Gma.4932.1.S1_at
Gene name NDX1 homeobox protein
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5979.5Gma.4932.1.S1_atBI970670NDX1 homeobox protein-2e-5At4g03090sequence-specific DNA binding / transcription factorS.X.H.G.
0.8291.9Gma.7179.1.S1_atAW348714--4e+0At3g53530heavy-metal-associated domain-containing proteinS.X.H.G.
0.5979.5Gma.8167.1.S1_atBI945308--5e+0At4g17160ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A)S.X.H.G.
0.5071.7Gma.8059.1.S1_atAW310669--2e+0At4g40050signal transducerS.X.H.G.
0.5071.7GmaAffx.51562.1.S1_atBE822242--4e-1At5g67390unknown proteinS.X.H.G.
0.4867.7Gma.5692.1.S1_atBM522647--3e-5At5g48640cyclin family proteinS.X.H.G.
0.4867.7Gma.8823.2.S1_atBU765654--1e-6At5g45560pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing proteinS.X.H.G.
0.4665.5Gma.7581.1.S1_atBI969748--1e-2At5g13300SFC (SCARFACE)S.X.H.G.
0.4665.5Gma.3926.1.S1_atBE801733--2e-38At1g04080PRP39S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.298.1GSM29237347_C104.1F.R9F3P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.697.7GSM29361342_2054.2B.R307P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.397.5GSM29360131_2069.2B.R213L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.097.2GSM258502Vegetative shoot apical meristem, replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.897.0GSM29223335_C030.1B.R9B2P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.897.0GSM29227923_C078.1E.SLE1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.796.8GSM237068Soy_shoot apical meristemGSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.696.7GSM267287Axillary meristem from 10-day-old soybean seedlings GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.696.7GSM237069Soy_shoot apical meristem2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.496.4GSM258503Soybean shoot apical meristem, 2 short-day replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.4401281GmaAffx.90844.1.S1_s_atCF806569NDX1 homeobox protein-1e+0At3g07525ATG10 (autophagy 10)C.G.S.X.
0.011e-140Gma.2395.2.S1_atBM886499--3e+0At3g07990SCPL27 (serine carboxypeptidase-like 27)C.G.S.X.
0.012e+036PsAffx.C49000074_atPsAffx.C49000074--3e-6At3g02450cell division protein ftsH, putativeC.G.S.X.
0.012e+036GmaAffx.65382.1.S1_atBE822173--4e-8At5g04620ATBIOF (BIOTIN F)C.G.S.X.
0.012e+036Gma.360.1.S1_atAW156714--6e-11At5g18850unknown proteinC.G.S.X.
0.012e+036Gma.15856.2.S1_atBE059022--7e-6At5g18280ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)C.G.S.X.
0.016e+034PsAffx.psHB025xE14f_atPsAffx.psHB025xE14f--1e+0At2g28230-C.G.S.X.
0.016e+034PsAffx.CL682Contig1_atPsAffx.CL682Contig1--8e+0At4g25270pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.016e+034PsAffx.CL368Contig1_atPsAffx.CL368Contig1--5e+0At5g09570-C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-552Arabidopsis thalianaAt4g03090828094sequence-specific DNA binding / transcription factorF:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMPFVB---C.G.S.X.
0.012e+034Hordeum vulgareContig1534_s_atContig1534--2e-5At3g08580AAC1 (ADP/ATP CARRIER 1)C.G.S.X.
0.044e-242Oryza sativaOs05g0188600AK111527.1-Hypothetical protein5e-1At2g30010-C.G.S.X.
0.172e-1275Populus trichocarpaPtpAffx.202430.1.S1_s_atpmrna4874hypothetical protein-1e+0At4g03090sequence-specific DNA binding / transcription factorC.G.S.X.
0.031e-346Triticum aestivumTa.3658.1.S1_x_atCD888145--9e-2At1g77000SKP2BC.G.S.X.
0.011e+034Vitis vinifera1612500_atCF515295--1e+0At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)C.G.S.X.
0.018e+032Zea maysZm.9272.1.A1_atBM380616--5e+0At4g16330oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage