Gene omics information

Query gene ID	Gma.4917.2.S1_a_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	92.5	Gma.4917.2.S1_a_at	BU964869	-	-	4e-6	At1g04940	TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)	S.X.	H.G.	Please select
0.83	92.5	GmaAffx.70388.1.S1_at	AW509072	-	-	4e+0	At2g47810	NF-YB5 (NUCLEAR FACTOR Y, SUBUNIT B5)	S.X.	H.G.	Please select
0.73	88.9	Gma.2654.2.S1_a_at	BE475379	-	-	2e-2	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	S.X.	H.G.	Please select
0.73	88.9	Gma.16753.2.S1_a_at	BQ079784	-	-	4e-4	At1g11750	CLPP6	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.76235.2.S1_at	BQ253236	-	-	9e-1	At3g11160	unknown protein	S.X.	H.G.	Please select
0.61	81.8	Gma.665.2.S1_a_at	CA799960	-	-	4e+0	At5g45690	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.7	99.8	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
25.9	99.8	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
19.9	99.7	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
19.7	99.7	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
17.9	99.7	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
17.3	99.7	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
17.1	99.7	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
17.1	99.7	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
16.8	99.7	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
16.3	99.6	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	0	751	Gma.4917.1.S1_at	BI969807	-	-	6e-20	At1g04940	TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)	C.G.	S.X.	Please select
0.04	1e+0	34	HgAffx.21844.1.S1_at	BI451714	-	-	3e+0	At5g49525	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	32	PsAffx.CL413Contig1_at	PsAffx.CL413Contig1	-	-	5e+0	At4g39760	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C20000063_s_at	PsAffx.C20000063	-	-	4e-6	At5g66760	SDH1-1	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C20000015_at	PsAffx.C20000015	-	-	1e+0	At3g06180	structural constituent of ribosome	C.G.	S.X.	Please select
0.03	5e+0	32	HgAffx.8103.1.S1_at	CB824385	-	-	1e+0	At5g19190	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	32	GmaAffx.63822.1.S1_at	BM520838	-	-	2e-10	At1g25230	purple acid phosphatase family protein	C.G.	S.X.	Please select
0.02	5e+0	32	GmaAffx.56692.1.S1_at	BU765870	-	-	5e-29	At1g01650	aspartic-type endopeptidase/ peptidase	C.G.	S.X.	Please select
0.04	5e+0	32	GmaAffx.48168.1.S1_at	BM271532	-	-	3e+0	At3g55820	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	4e-6	52	Arabidopsis thaliana	At1g04940	839374	TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)	Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	34	Hordeum vulgare	HS03O16u_at	HS03O16u	-	-	4e+0	At5g63040	unknown protein	C.G.	S.X.	Please select
0.04	3e+1	30	Oryza sativa	OsAffx.3241.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	6e-6	52	Populus trichocarpa	Ptp.5867.1.S1_at	CV245725	-	-	1e-42	At1g04940	TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.4437.1.S1_at	CA741816	-	-	4e-3	At5g40260	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.05	5e-9	59	Vitis vinifera	1611665_at	CD802305	hypothetical protein LOC100264361	-	5e-26	At1g04940	TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.14617.1.A1_at	BM080453	Hypothetical protein LOC100191188	-	2e+0	At2g33130	RALFL18 (ralf-like 18)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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