Gene omics information

Query gene ID	Gma.4761.1.S1_a_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	Gma.4761.1.S1_a_at	CD413738	-	-	6e-6	At5g27620	CYCH	S.X.	H.G.	Please select
0.46	65.5	Gma.4991.1.S1_at	CD401320	-	-	3e-30	At1g01230	ORMDL family protein	S.X.	H.G.	Please select
0.42	59.3	GmaAffx.5951.1.S1_at	BU546964	-	-	3e-2	At3g08650	metal transporter family protein	S.X.	H.G.	Please select
0.38	53.3	Gma.7510.1.A1_at	BU548234	-	-	7e-28	At1g79610	sodium proton exchanger, putative (NHX6)	S.X.	H.G.	Please select
0.35	48.6	Gma.1721.1.S1_at	CD418534	-	-	2e-62	At5g61500	ATG3	S.X.	H.G.	Please select
0.23	29.9	Gma.2518.3.S1_at	BG156372	-	-	1e-20	At1g03260	-	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.2	99.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
17.6	99.7	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
10.3	99.3	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
2.9	95.4	GSM293526	42_2022.2A.R275P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM294244	92_2340.2H.R202P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM293333	22_1549.1Q.R078L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM293584	16_2089.2B.R181U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM293586	18_2092.2B.R298P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM293307	89_1202.1P.R124P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM292938	19_1524.1M.R315P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.87	0	940	Gma.4761.1.S1_x_at	CD413738	-	-	6e-6	At5g27620	CYCH	C.G.	S.X.	Please select
0.40	0	698	Gma.4761.2.S1_at	BI945125	cyclin H	-	3e-21	At5g27620	CYCH	C.G.	S.X.	Please select
0.09	1e-23	111	Gma.12835.1.A1_at	CD391990	-	-	1e-6	At5g49990	xanthine/uracil permease family protein	C.G.	S.X.	Please select
0.09	6e-22	105	GmaAffx.1301.82.S1_at	AI416916	-	-	4e-19	At5g13660	unknown protein	C.G.	S.X.	Please select
0.10	2e-21	103	GmaAffx.59135.1.S1_at	BG510376	-	-	6e-14	At1g50380	prolyl oligopeptidase family protein	C.G.	S.X.	Please select
0.06	4e-20	99	Gma.10626.1.S1_at	BE821063	-	-	5e-1	At4g35460	NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B)	C.G.	S.X.	Please select
0.10	9e-18	91	Gma.10922.1.S1_at	BE608172	-	-	9e-1	At4g04360	unknown protein	C.G.	S.X.	Please select
0.04	3e-8	59	Gma.17747.1.S1_at	BQ628554	-	-	8e-3	At1g08500	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.06	1e-7	57	GmaAffx.37725.1.S1_at	BQ629628	-	-	1e-56	At5g19820	emb2734 (embryo defective 2734)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	6e-6	52	Arabidopsis thaliana	At5g27620	832824	CYCH	core cell cycle genes	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e-1	34	Hordeum vulgare	Contig12425_at	Contig12425	-	-	4e-4	At2g16710	hesB-like domain-containing protein	C.G.	S.X.	Please select
0.02	1e+1	32	Oryza sativa	OsAffx.5542.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e-5	50	Populus trichocarpa	Ptp.132.1.S1_at	AF092743.1	hypothetical protein	-	1e-21	At5g27620	CYCH	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	2e-2	40	Triticum aestivum	Ta.6615.1.A1_a_at	CD454648	-	-	1e+0	At4g04930	DES-1-LIKE	C.G.	S.X.	Please select
0.05	2e+0	32	Vitis vinifera	1621740_at	BQ794084	hypothetical protein LOC100264349	-	1e-3	At4g36050	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please select
0.05	6e-1	34	Zea mays	Zm.13750.1.A1_at	AY105949.1	cyclin-H	-	7e-8	At5g27620	CYCH	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage