Gene omics information

Query gene ID	Gma.4604.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.4604.1.S1_at	CA802306	-	-	3e-47	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	S.X.	H.G.	Please select
0.62	82.1	Gma.7139.1.S1_at	BI971209	-	-	3e-2	At3g47300	SELT (SELT-LIKE PROTEIN PRECURSOR)	S.X.	H.G.	Please select
0.52	73.1	Gma.14945.1.S1_at	BG157566	-	-	2e-1	At3g12210	sequence-specific DNA binding	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.46271.1.S1_at	AW348765	-	-	1e+0	At4g16800	enoyl-CoA hydratase, putative	S.X.	H.G.	Please select
0.42	59.3	Gma.5594.1.S1_at	BQ786297	-	-	1e-9	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	S.X.	H.G.	Please select
0.41	58.1	GmaAffx.39725.1.S1_at	BI945410	-	-	8e-1	At3g57280	unknown protein	S.X.	H.G.	Please select
0.38	53.3	Gma.11144.2.S1_x_at	CD401702	-	-	7e-61	At1g75630	AVA-P4	S.X.	H.G.	Please select
0.35	48.6	Gma.7635.1.S1_at	AW310136	-	-	9e-7	At2g41790	peptidase M16 family protein / insulinase family protein	S.X.	H.G.	Please select
0.34	47.2	Gma.11052.1.S1_at	AI795084	-	-	7e-31	At3g23490	CYN (CYANASE)	S.X.	H.G.	Please select
0.30	40.4	Gma.11144.1.S1_a_at	BE820412	-	-	3e-107	At4g34720	AVA-P1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.7	99.5	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.0	99.4	GSM201127	Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
11.8	99.4	GSM201120	Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
10.8	99.4	GSM201126	Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
10.2	99.3	GSM293197	79_C053.1O.R9O3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.8	99.1	GSM292230	28_1045.1B.R025L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.8	99.1	GSM201121	Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.7	99.0	GSM201124	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.1	98.8	GSM293112	27_C047.1O.R9O2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.0	98.8	GSM201125	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	0	1350	GmaAffx.91508.1.A1_at	CF807269	-	-	1e-47	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	C.G.	S.X.	Please select
0.52	0	1350	GmaAffx.91508.1.S1_s_at	CF806158	-	-	1e-47	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	C.G.	S.X.	Please select
0.46	0	1084	Gma.4604.2.S1_at	AW317203	-	-	6e-47	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	C.G.	S.X.	Please select
0.25	4e-121	436	Gma.4604.3.S1_a_at	BU083163	-	-	3e-1	At5g12140	ATCYS1 (A. thaliana cystatin-1)	C.G.	S.X.	Please select
0.25	4e-121	436	Gma.4604.3.S1_at	BU083163	-	-	3e-1	At5g12140	ATCYS1 (A. thaliana cystatin-1)	C.G.	S.X.	Please select
0.16	9e-39	163	Gma.16743.1.S1_at	BI784831	-	-	2e-1	At5g12140	ATCYS1 (A. thaliana cystatin-1)	C.G.	S.X.	Please select
0.02	9e-2	40	Gma.17535.1.S1_at	BM178659	-	-	3e-11	At5g43850	ARD4	C.G.	S.X.	Please select
0.01	3e-1	38	HgAffx.12707.1.S1_at	CB375275	-	-	9e-1	At5g17470	calmodulin-related protein, putative	C.G.	S.X.	Please select
0.02	3e-1	38	GmaAffx.56880.1.A1_at	CD417758	-	-	3e+0	At1g01160	SSXT protein-related / transcription co-activator-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	3e-47	190	Arabidopsis thaliana	At4g14710	827122	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-1	36	Hordeum vulgare	Contig3204_at	Contig3204	iron-deficiency induced gene	-	5e-7	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	C.G.	S.X.	Please select
0.05	5e-4	48	Oryza sativa	Os10g0419400	AK103834.1	-	Submergence induced protein 2	1e-10	At4g14716	ATARD1 (ACIREDUCTONE DIOXYGENASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	7e-61	236	Populus trichocarpa	Ptp.5804.1.S1_at	BI130776	hypothetical protein	-	2e-34	At4g14716	ATARD1 (ACIREDUCTONE DIOXYGENASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	7e-2	40	Triticum aestivum	Ta.13677.1.S1_at	BJ308472	-	-	4e-5	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	C.G.	S.X.	Please select
0.22	3e-87	321	Vitis vinifera	1617562_at	CF512363	hypothetical protein LOC100246010	-	5e-60	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	C.G.	S.X.	Please select
0.13	7e-6	52	Zea mays	Zm.3612.1.A1_at	AY103746.1	hypothetical protein LOC100216585	-	2e-12	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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