CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.4553.1.A1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 Gma.4553.1.A1_at BU081133 - - 1e-48 At1g52510 hydrolase, alpha/beta fold family protein S.X. H.G.
0.73 88.9 GmaAffx.91387.1.S1_s_at CF807112 - - 2e-26 At1g62750 SCO1 (SNOWY COTYLEDON 1) S.X. H.G.
0.59 79.5 Gma.16539.1.S1_at CD401874 - - 1e-32 At3g24430 HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101) S.X. H.G.
0.56 78.2 Gma.10987.2.S1_a_at AW348351 - - 3e-133 At2g39730 RCA (RUBISCO ACTIVASE) S.X. H.G.
0.50 71.7 GmaAffx.7871.1.S1_at BM521003 - - 1e-4 At1g14345 oxidoreductase S.X. H.G.
0.32 43.7 Gma.13129.1.S1_at CD404336 - - 2e-62 At5g17170 ENH1 (enhancer of sos3-1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
167.4 100.0 GSM209582 mock_0hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
143.6 100.0 GSM209581 susceptible_48hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
134.6 100.0 GSM209580 resistant_48hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
119.0 100.0 GSM209591 mock_0hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
110.0 100.0 GSM170924 V2 Control, biological rep1 GSE7108 Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
97.1 100.0 GSM170926 Rust Innoculated, biological rep1 GSE7108 Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
96.9 100.0 GSM238058 Soybean-S03W4-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
86.2 100.0 GSM238030 Soybean-2601R-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
81.9 100.0 GSM238059 Soybean-S03W4-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
81.5 100.0 GSM238057 Soybean-S03W4-1-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 GmaAffx.93214.1.S1_at CF808939 - - 7e+0 At5g55650 unknown protein C.G. S.X.
0.02 3e-1 38 GmaAffx.51443.1.S1_at BQ612029 - - 1e-2 At4g19580 heat shock protein binding C.G. S.X.
0.01 3e-1 38 Gma.7140.1.S1_at BE657222 - - 5e-8 At5g04430 BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) C.G. S.X.
0.02 1e+0 36 GmaAffx.973.1.S1_at BG237944 - - 4e+0 At5g08370 AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2) C.G. S.X.
0.01 1e+0 36 Gma.5930.1.S1_at CD396121 - - 3e-8 At3g03490 PEX19-1 (peroxin 19-1) C.G. S.X.
0.01 4e+0 34 PsAffx.C56000052_at PsAffx.C56000052 - - 5e-1 At1g11750 CLPP6 C.G. S.X.
0.02 4e+0 34 GmaAffx.75428.1.S1_at BE657735 - - 3e+0 At5g20820 auxin-responsive protein-related C.G. S.X.
0.02 4e+0 34 Gma.9456.1.S1_at CA818913 - - 9e+0 At5g60615 - C.G. S.X.
0.01 4e+0 34 Gma.7107.1.S1_at AI855972 - - 2e+0 At5g53360 seven in absentia (SINA) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 1e-48 194 Arabidopsis thaliana At1g52510 841682 hydrolase, alpha/beta fold family protein F:hydrolase activity, catalytic activity;P:unknown;C:chloroplast, chloroplast envelope;BOPMFA - - - C.G. S.X.
0.05 3e-5 50 Hordeum vulgare Contig10144_s_at Contig10144 - - 1e-13 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.17 3e-11 71 Oryza sativa Os04g0644600 AK099966.1 - Epoxide hydrolase family protein 4e-21 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.25 8e-20 99 Populus trichocarpa PtpAffx.112731.1.A1_at CV239317 - - 2e-18 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.02 8e-1 36 Triticum aestivum Ta.4650.3.A1_at CA595174 - - 8e-1 At3g32090 transcription factor-related C.G. S.X.
0.19 5e-36 151 Vitis vinifera 1616407_at CD715829 hypothetical protein LOC100250971 - 7e-9 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.02 5e+0 32 Zea mays Zm.8481.1.A1_at BM074317 hypothetical protein LOC100193693 - 3e-1 At1g04645 self-incompatibility protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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