Gene omics information

Query gene ID	Gma.4531.3.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.89	93.5	Gma.4531.3.S1_at	BE059056	-	-	3e-3	At4g08950	EXO (EXORDIUM)	S.X.	H.G.	Please select
0.35	48.6	Gma.4531.1.A1_a_at	BI701255	-	-	3e+0	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	S.X.	H.G.	Please select
0.07	10.2	GmaAffx.5992.1.A1_at	BU549357	-	-	1e-24	At5g01710	-	S.X.	H.G.	Please select
0.06	9.0	GmaAffx.69994.1.S1_at	CD417025	-	-	3e-4	At4g08950	EXO (EXORDIUM)	S.X.	H.G.	Please select
0.06	9.0	GmaAffx.38434.1.S1_at	CA936792	-	-	3e-2	At3g25030	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.05	8.0	Gma.6758.1.S1_s_at	BU760603	-	-	8e-5	At2g41420	proline-rich family protein	S.X.	H.G.	Please select
0.05	8.0	Gma.13075.1.S1_at	CD405748	-	-	2e-28	At1g09160	protein phosphatase 2C-related / PP2C-related	S.X.	H.G.	Please select
0.04	7.0	Gma.1337.1.S1_s_at	CA802041	-	-	9e-1	At5g11740	AGP15 (ARABINOGALACTAN PROTEIN 15)	S.X.	H.G.	Please select
0.03	5.8	Gma.2885.1.S1_at	BU764174	-	-	3e-6	At2g02360	AtPP2-B10 (Phloem protein 2-B10)	S.X.	H.G.	Please select
0.03	5.8	Gma.4164.1.S1_at	BI968666	MYB transcription factor MYB112	-	3e-5	At4g37260	MYB73 (MYB DOMAIN PROTEIN 73)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
145.7	100.0	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
130.4	100.0	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
120.1	100.0	GSM182033	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
52.9	99.9	GSM201125	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
39.6	99.9	GSM191082	Soybean_Cotyledon_EN2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
33.1	99.9	GSM147934	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
32.7	99.9	GSM147953	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
30.7	99.8	GSM182038	Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
30.7	99.8	GSM191077	Soybean_Cotyledon_SUS1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
30.5	99.8	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	3e-47	188	Gma.4531.2.S1_at	BQ628605	-	-	5e-11	At4g08950	EXO (EXORDIUM)	C.G.	S.X.	Please select
0.37	2e-38	159	Gma.4531.1.A1_a_at	BI701255	-	-	3e+0	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	C.G.	S.X.	Please select
0.15	1e-3	44	GmaAffx.69994.1.S1_at	CD417025	-	-	3e-4	At4g08950	EXO (EXORDIUM)	C.G.	S.X.	Please select
0.04	2e-2	40	GmaAffx.37965.1.A1_at	BU549646	-	-	3e-1	At1g23910	-	C.G.	S.X.	Please select
0.04	2e-1	36	GmaAffx.6602.1.S1_at	AW309223	-	-	3e-19	At1g74340	dolichol phosphate-mannose biosynthesis regulatory protein-related	C.G.	S.X.	Please select
0.03	1e+0	34	HgAffx.23183.1.S1_at	CB824904	-	-	2e+0	At1g60280	ANAC023 (Arabidopsis NAC domain containing protein 23)	C.G.	S.X.	Please select
0.03	1e+0	34	Gma.8299.1.S1_at	BI967830	-	-	6e-16	At3g17090	protein phosphatase 2C family protein / PP2C family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.13118.1.S1_at	BG839247	CDC2	-	4e-39	At3g48750	CDC2 (CELL DIVISION CONTROL 2)	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C325000004_at	PsAffx.C325000004	-	-	2e-1	At3g25890	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-3	42	Arabidopsis thaliana	At4g08950	826473	EXO (EXORDIUM)	F:molecular_function unknown;P:response to brassinosteroid stimulus;C:cell wall, plant-type cell wall;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-2	36	Hordeum vulgare	Contig12147_at	Contig12147	-	-	2e-3	At5g64260	EXL2 (EXORDIUM LIKE 2)	C.G.	S.X.	Please select
0.03	9e-2	38	Oryza sativa	Os02g0720500	AK108932.1	-	Peptidase aspartic family protein	2e+0	At3g63020	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.95367.1.A1_at	CV249815	-	-	3e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	2e-1	36	Triticum aestivum	Ta.9669.1.S1_at	BJ225818	-	-	5e+0	At1g06180	ATMYB13 (MYB DOMAIN PROTEIN 13)	C.G.	S.X.	Please select
0.09	6e-5	46	Vitis vinifera	1620714_at	CB969540	hypothetical protein LOC100259041	-	8e-19	At4g08950	EXO (EXORDIUM)	C.G.	S.X.	Please select
0.09	8e-2	36	Zea mays	Zm.11809.1.A1_at	BM380911	phi-1-like phosphate-induced protein	-	5e-3	At5g64260	EXL2 (EXORDIUM LIKE 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage