Gene omics information

Query gene ID	Gma.4360.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	76.3	Gma.4360.1.S1_s_at	BG236888	-	-	3e-28	At1g76690	OPR2	S.X.	H.G.	Please select
0.74	89.2	Gma.5590.1.S1_a_at	BE822176	-	-	7e-108	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	S.X.	H.G.	Please select
0.60	80.7	Gma.5590.1.S1_at	BE822176	-	-	7e-108	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	S.X.	H.G.	Please select
0.57	78.8	Gma.10326.1.S1_s_at	CD414575	-	-	6e-60	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	S.X.	H.G.	Please select
0.56	78.2	GmaAffx.90764.1.S1_at	CF805757	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	S.X.	H.G.	Please select
0.48	67.7	GmaAffx.90764.1.S1_s_at	CF805757	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	S.X.	H.G.	Please select
0.47	66.6	GmaAffx.90530.1.S1_s_at	CF806255	-	-	1e-12	At1g76680	OPR1	S.X.	H.G.	Please select
0.32	43.7	Gma.8351.1.S1_s_at	AI443561	-	-	2e-10	At5g19440	cinnamyl-alcohol dehydrogenase, putative (CAD)	S.X.	H.G.	Please select
0.29	39.0	Gma.15492.1.S1_s_at	AF276302.1	chalcone isomerase	-	2e+0	At1g52510	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.1	99.0	GSM171699	3_W.I.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.9	98.8	GSM294667	39_3219.2M.SLM1U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.8	98.7	GSM293708	44_3049.2C.SLC3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.7	98.7	GSM171714	7_V.I.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.4	98.6	GSM293200	81_C039.1O.SLO1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2	98.6	GSM292180	38-C005.1A.SLA1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM293558	71_3013.2A.SLA3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM293691	29_3045.2C.SLC2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM171659	24_W.F.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.0	98.5	GSM171610	13_V.A.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	2e-146	519	GmaAffx.90530.1.S1_at	CF806255	-	-	1e-12	At1g76680	OPR1	C.G.	S.X.	Please select
0.31	2e-146	519	GmaAffx.90530.1.S1_s_at	CF806255	-	-	1e-12	At1g76680	OPR1	C.G.	S.X.	Please select
0.17	6e-76	286	PsAffx.psHB004xE22f_at	PsAffx.psHB004xE22f	-	-	2e+1	At3g58000	VQ motif-containing protein	C.G.	S.X.	Please select
0.37	2e-39	165	GmaAffx.67883.1.S1_at	BG046605	-	-	1e-15	At1g76690	OPR2	C.G.	S.X.	Please select
0.15	1e-37	159	GmaAffx.93518.1.S1_at	CF806869	-	-	2e-16	At1g76690	OPR2	C.G.	S.X.	Please select
0.21	2e-17	91	GmaAffx.18868.1.S1_s_at	BI971360	-	-	4e-4	At1g09400	12-oxophytodienoate reductase, putative	C.G.	S.X.	Please select
0.20	2e-8	61	GmaAffx.83910.1.S1_at	BE022012	-	-	1e-2	At1g09400	12-oxophytodienoate reductase, putative	C.G.	S.X.	Please select
0.03	2e-2	42	GmaAffx.83885.1.S1_at	BG725901	-	-	2e-8	At2g06050	OPR3 (OPDA-REDUCTASE 3)	C.G.	S.X.	Please select
0.02	2e-2	42	GmaAffx.79350.1.S1_s_at	CA852681	-	-	3e+0	At5g14345	copper ion binding / electron carrier	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	3e-28	127	Arabidopsis thaliana	At1g76690	844002	OPR2	Encodes one of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	6e-3	42	Hordeum vulgare	Contig5146_at	Contig5146	-	-	4e-21	At1g76690	OPR2	C.G.	S.X.	Please select
0.09	1e-3	46	Oryza sativa	Os.15627.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.48	8e-57	222	Populus trichocarpa	PtpAffx.26497.1.S1_at	CK105060	-	-	3e-52	At1g76690	OPR2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	1e-2	42	Triticum aestivum	Ta.30735.1.S1_at	CN009367	-	-	1e-17	At1g76680	OPR1	C.G.	S.X.	Please select
0.36	6e-51	200	Vitis vinifera	1607601_at	CF209956	hypothetical protein LOC100244746	-	2e-15	At1g09400	12-oxophytodienoate reductase, putative	C.G.	S.X.	Please select
0.21	5e-3	42	Zea mays	Zm.7548.1.A1_at	BM078903	12-oxo-phytodienoic acid reductase5	-	5e-11	At1g76690	OPR2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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