Gene omics information

Query gene ID	Gma.4335.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	71.7	Gma.4335.1.S1_at	BU548713	-	-	8e-3	At2g17190	ubiquitin family protein	S.X.	H.G.	Please select
0.53	74.2	Gma.17700.2.S1_at	AW100928	-	-	2e-19	At2g20760	protein binding / structural molecule	S.X.	H.G.	Please select
0.43	60.6	GmaAffx.92496.1.S1_s_at	CF808221	-	-	1e-75	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	S.X.	H.G.	Please select
0.33	46.1	Gma.2905.1.S1_at	AI442972	-	-	4e-172	At4g29040	RPT2a (regulatory particle AAA-ATPase 2a)	S.X.	H.G.	Please select
0.27	35.7	Gma.16985.1.S1_at	CD395499	-	-	1e-9	At2g47700	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.18	22.3	Gma.2136.3.S1_at	BE057237	-	-	4e-156	At3g05530	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.1	92.3	GSM191080	Soybean_Cotyledon_ES2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
1.9	90.9	GSM293307	89_1202.1P.R124P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
1.8	90.1	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
1.8	90.1	GSM293526	42_2022.2A.R275P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
1.8	90.1	GSM294209	60_2363.2H.R155L_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
1.8	90.1	GSM292913	86_1447.1L.R273L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
1.8	90.1	GSM292914	87_1471.1L.R286U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
1.8	90.1	GSM191092	Soybean_Cotyledon_SEED2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
1.8	90.1	GSM293594	25_2056.2B.R020P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
1.7	89.2	GSM293381	66_C087.1Q.V7Q3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	4e-135	482	Gma.2119.2.A1_at	BM525405	-	-	1e-8	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select
0.02	3e+0	34	GmaAffx.75875.1.S1_at	AW598284	-	-	3e-56	At2g41740	VLN2 (VILLIN 2)	C.G.	S.X.	Please select
0.02	3e+0	34	GmaAffx.27048.1.S1_at	BG047187	-	-	9e-7	At5g66540	-	C.G.	S.X.	Please select
0.02	3e+0	34	Gma.2241.1.A1_at	AW350857	-	-	4e-6	At1g51490	BGLU36 (BETA GLUCOSIDASE 36)	C.G.	S.X.	Please select
0.02	1e+1	32	PsAffx.CL1363Contig1_at	PsAffx.CL1363Contig1	-	-	2e-23	At5g20570	RBX1 (RING-BOX 1)	C.G.	S.X.	Please select
0.01	1e+1	32	PsAffx.C7000132_at	PsAffx.C7000132	-	-	7e-2	At2g40935	unknown protein	C.G.	S.X.	Please select
0.00	1e+1	32	PsAffx.C54000111_at	PsAffx.C54000111	-	-	3e-1	At1g72990	BGAL17 (beta-galactosidase 17)	C.G.	S.X.	Please select
0.01	1e+1	32	PsAffx.C29000034_at	PsAffx.C29000034	-	-	1e+1	At5g52700	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.01	1e+1	32	PsAffx.C21000062_at	PsAffx.C21000062	-	-	2e+0	At4g01830	PGP5 (P-GLYCOPROTEIN 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	8e-3	42	Arabidopsis thaliana	At2g17190	816224	ubiquitin family protein	F:molecular_function unknown;P:protein modification process;C:unknown;MOPFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e+0	32	Hordeum vulgare	Contig26420_at	Contig26420	-	-	2e-1	At1g69780	ATHB13	C.G.	S.X.	Please select
0.02	7e-2	40	Oryza sativa	Os03g0131300	AK100656.1	-	Ubiquitin domain containing protein	5e-12	At2g17200	ubiquitin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	3e-3	44	Populus trichocarpa	PtpAffx.160603.1.A1_at	CV227293	hypothetical protein	-	1e+0	At5g44390	FAD-binding domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e-2	40	Triticum aestivum	Ta.15576.1.S1_at	CA485581	-	-	1e+0	At2g31550	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.29	8e-25	113	Vitis vinifera	1622793_at	CB920514	hypothetical protein LOC100247146 /// hypothetical protein LOC100250759	-	3e-5	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select
0.05	6e-5	48	Zea mays	ZmAffx.116.1.A1_at	AI665610	-	-	3e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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