CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.4310.1.S1_at

Gene name chorismate synthase

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.9 Gma.4310.1.S1_at BE822674 chorismate synthase - 3e-58 At1g48850 EMB1144 (embryo defective 1144) S.X. H.G.
0.44 63.3 Gma.10705.1.S1_a_at CD393805 plastid glucose 6 phosphate/phosphate translocator-like - 3e-47 At5g54800 GPT1 S.X. H.G.
0.44 63.3 Gma.10705.1.S1_at CD393805 plastid glucose 6 phosphate/phosphate translocator-like - 3e-47 At5g54800 GPT1 S.X. H.G.
0.33 46.1 Gma.1111.1.S1_x_at AW203448 - - 1e-100 At1g59900 AT-E1 ALPHA S.X. H.G.
0.20 25.1 GmaAffx.1301.122.A1_s_at CD401663 - - 8e-10 At4g26910 2-oxoacid dehydrogenase family protein S.X. H.G.
0.15 18.7 Gma.11220.2.S1_a_at CF920389 - - 2e-19 At4g29010 AIM1 (ABNORMAL INFLORESCENCE MERISTEM) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.9 98.8 GSM171666 26_V.E.I.3, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.3 98.6 GSM171686 30_V.F.I.3, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.8 98.4 GSM171653 22_Z.E.I.3, Experimental replicate Z GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.0 98.0 GSM171691 31_W.L.I.3, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.0 98.0 GSM293600 30_2081.2B.R035L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM171714 7_V.I.I.3, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.7 97.8 GSM171659 24_W.F.I.3, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.7 97.8 GSM171716 7_Y.I.I.3, Experimental replicate Y GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.6 97.7 GSM171642 20_V.C.I.3, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.6 97.7 GSM171630 18_Z.I.I.3, Experimental replicate Z GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 8e-146 517 GmaAffx.92300.1.S1_s_at CF807658 Chorismate synthase - 5e-50 At1g48850 EMB1144 (embryo defective 1144) C.G. S.X.
0.13 4e-43 176 GmaAffx.73401.1.S1_x_at BI971895 Chorismate synthase - 1e+1 At5g42797 LCR28 (Low-molecular-weight cysteine-rich 28) C.G. S.X.
0.02 2e-1 38 GmaAffx.61177.1.S1_at CA801992 - - 9e-10 At4g39700 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.02 8e-1 36 GmaAffx.46141.1.S1_at BU549193 - - 1e+0 At4g05060 vesicle-associated membrane family protein / VAMP family protein C.G. S.X.
0.02 8e-1 36 GmaAffx.21023.1.A1_at AW348664 - - 6e-2 At1g01030 NGA3 (NGATHA3) C.G. S.X.
0.01 8e-1 36 Gma.5822.1.S1_at U42608.1 clathrin heavy chain - 0 At3g08530 clathrin heavy chain, putative C.G. S.X.
0.01 3e+0 34 PsAffx.C92000003_at PsAffx.C92000003 - - 3e+0 At5g65166 unknown protein C.G. S.X.
0.01 3e+0 34 PsAffx.C64000063_at PsAffx.C64000063 - - 6e-1 At1g02710 glycine-rich protein C.G. S.X.
0.01 3e+0 34 PsAffx.C46000060_at PsAffx.C46000060 - - 5e-1 At1g23147 RALFL3 (RALF-LIKE 3) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 3e-58 226 Arabidopsis thaliana At1g48850 841307 EMB1144 (embryo defective 1144) F:chorismate synthase activity;P:embryonic development ending in seed dormancy, aromatic amino acid family biosynthetic process;C:nucleolus, chloroplast;OBAFPM - - - C.G. S.X.
0.07 8e-11 67 Hordeum vulgare Contig5108_s_at Contig5108 - - 6e-9 At1g48850 EMB1144 (embryo defective 1144) C.G. S.X.
0.36 4e-71 270 Oryza sativa Os.49758.1.A1_at - - - 0 C.G. S.X.
0.56 4e-154 545 Populus trichocarpa Ptp.1640.1.S1_at CX654231 chorismate synthase /// chorismate synthase - 5e-109 At1g48850 EMB1144 (embryo defective 1144) C.G. S.X.
0.11 7e-10 65 Triticum aestivum Ta.4852.1.S1_at CK198834 - - 4e-12 At1g48850 EMB1144 (embryo defective 1144) C.G. S.X.
0.51 2e-140 498 Vitis vinifera 1607321_at CB973341 hypothetical protein LOC100241015 - 1e-36 At1g48850 EMB1144 (embryo defective 1144) C.G. S.X.
0.27 1e-15 83 Zea mays Zm.18081.1.S1_at BM268388 chorismate synthase 2 - 1e-7 At1g48850 EMB1144 (embryo defective 1144) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage