CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.4305.3.S1_a_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 88.9 Gma.4305.3.S1_a_at BG044173 - - 5e-8 At5g57940 ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) S.X. H.G.
0.50 71.7 GmaAffx.75287.1.S1_at BM086047 - - 2e-1 At4g01000 ubiquitin family protein S.X. H.G.
0.46 65.5 GmaAffx.91473.1.S1_at CF807198 - - 3e-22 At4g28860 ckl4 (Casein Kinase I-like 4) S.X. H.G.
0.46 65.5 GmaAffx.42058.1.S1_at AW507617 - - 3e-13 At1g61040 VIP5 (vernalization independence 5) S.X. H.G.
0.43 60.6 GmaAffx.7255.1.S1_at BE657500 - - 3e-8 At4g37460 SRFR1 (SUPPRESSOR OF RPS4-RLD 1) S.X. H.G.
0.38 53.3 GmaAffx.92146.1.S1_s_at CF807871 - - 2e-42 At2g29580 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
65.1 100.0 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
15.1 99.6 GSM244917 4_VP9.I3U4.CEL, Experimental replicate 4 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
12.0 99.4 GSM244909 3_VP9.I3L2.CEL, Experimental replicate 2 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
11.6 99.4 GSM293551 65_3017.2A.R9A3U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.4 99.4 GSM171610 13_V.A.I.3, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
11.0 99.4 GSM293553 67_3017.2A.R9A3L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.9 99.4 GSM292529 43_1317.1H.R200U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.6 99.3 GSM293268 53_C067.1P.R9P3U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.6 99.3 GSM294047 96_3095.2F.R9F1L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.0 99.3 GSM292616 44_1339.1I.R213U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 793 Gma.4305.3.S1_at BG044173 - - 5e-8 At5g57940 ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) C.G. S.X.
0.19 8e-85 313 Gma.4305.1.S1_at AW350687 - - 4e-5 At3g49120 PRXCB (PEROXIDASE CB) C.G. S.X.
0.04 5e-6 52 GmaAffx.90390.1.S1_at CF806115 peroxidase - 7e-10 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) C.G. S.X.
0.04 5e-6 52 Gma.413.1.S1_at BQ611370 peroxidase - 7e-10 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) C.G. S.X.
0.04 5e-6 52 Gma.413.1.S1_s_at BQ611370 peroxidase - 7e-10 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) C.G. S.X.
0.03 3e-4 46 Gma.6564.1.S1_at BQ613091 - - 1e-2 At3g49110 PRXCA (PEROXIDASE CA) C.G. S.X.
0.01 7e-2 38 PsAffx.C134000038_at PsAffx.C134000038 - - 1e-1 At5g42070 unknown protein C.G. S.X.
0.00 3e-1 36 PsAffx.C23000114_at PsAffx.C23000114 - - 4e+0 At3g61490 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.05 3e-1 36 Gma.6600.1.S1_at BQ629090 - - 1e-1 At3g58350 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 5e-8 57 Arabidopsis thaliana At5g57940 835905 ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) member of Cyclic nucleotide gated channel family - - - C.G. S.X.
0.09 3e-2 38 Hordeum vulgare EBro03_SQ003_J21_at EBro03_SQ003_J21 - - 8e-1 At5g04386 unknown protein C.G. S.X.
0.06 2e-12 73 Oryza sativa Os01g0963000 AK109480.1 - Peroxidase BP 1 precursor 6e-1 At5g40150 peroxidase, putative C.G. S.X.
0.16 1e-12 73 Populus trichocarpa Ptp.8118.3.S1_at CV257922 hypothetical protein - 7e-12 At4g30560 ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9) C.G. S.X.
0.11 2e-7 56 Triticum aestivum Ta.29496.2.S1_at CA614697 - - 2e-4 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) C.G. S.X.
0.04 9e-1 32 Vitis vinifera 1610532_at CB348040 - - 2e+1 At5g50090 unknown protein C.G. S.X.
0.05 2e-8 57 Zea mays Zm.2136.1.S1_at AW282383 hypothetical protein LOC100192761 - 5e-5 At1g44970 peroxidase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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