Gene omics information

Query gene ID	Gma.4300.1.S1_s_at
Gene name	chalcone synthase
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.4300.1.S1_s_at	S46989.1	chalcone synthase	-	5e-29	At5g13930	TT4 (TRANSPARENT TESTA 4)	S.X.	H.G.	Please select
0.83	92.5	Gma.4300.3.S1_s_at	AI443042	chalcone synthase	-	1e-5	At5g13930	TT4 (TRANSPARENT TESTA 4)	S.X.	H.G.	Please select
0.80	91.5	Gma.15492.1.S1_s_at	AF276302.1	chalcone isomerase	-	2e+0	At1g52510	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.77	90.3	GmaAffx.37677.1.S1_s_at	BE022626	HIDH mRNA for 2-hydroxyisoflavanone dehydratase	-	3e-1	At2g30050	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.73	88.9	GmaAffx.91944.1.S1_s_at	CF808330	NAD(P)H dependent 6'-deoxychalcone synthase	-	4e-2	At4g37690	galactosyl transferase GMA12/MNN10 family protein	S.X.	H.G.	Please select
0.67	86.1	Gma.4300.3.S1_x_at	AI443042	chalcone synthase	-	1e-5	At5g13930	TT4 (TRANSPARENT TESTA 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	98.9	GSM293546	60_2021.2A.R275L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.2	98.9	GSM293543	58_2017.2A.R245L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM293553	67_3017.2A.R9A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM171699	3_W.I.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.3	98.2	GSM171632	18_W.E.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.2	98.1	GSM171711	6_W.B.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.1	98.1	GSM292901	75_1457.1L.R279U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM171639	1_W.F.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.0	98.0	GSM244822	20_CON.I3L1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.0	98.0	GSM293756	88_2113.2C.R285L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	0	1984	Gma.4300.1.A1_at	S46989.1	Chalcone synthase [soybeans, mRNA, 1119 nt]	-	5e-29	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.98	0	1984	Gma.4300.1.S1_at	S46989.1	Chalcone synthase [soybeans, mRNA, 1119 nt]	-	5e-29	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.62	4e-160	565	GmaAffx.92491.1.S1_s_at	CF808255	chalcone synthase 1	-	5e-17	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.62	1e-156	553	Gma.17605.1.S1_at	BI968208	chalcone synthase 1	-	9e-16	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.38	6e-122	438	Gma.4300.3.S1_x_at	AI443042	chalcone synthase	-	1e-5	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.38	6e-122	438	Gma.4300.3.S1_s_at	AI443042	chalcone synthase	-	1e-5	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.51	8e-75	282	Gma.5579.1.S1_at	AW119360	-	-	2e-12	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.16	7e-23	109	Gma.17605.3.S1_at	BQ079859	chalcone synthase 1	-	7e-20	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.14	8e-7	56	GmaAffx.77637.1.S1_at	BE190264	-	-	3e-44	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	5e-29	129	Arabidopsis thaliana	At5g13930	831241	TT4 (TRANSPARENT TESTA 4)	Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	3e-7	56	Hordeum vulgare	Contig7356_at	Contig7356	-	-	8e-69	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.03	1e+0	36	Oryza sativa	OsAffx.25009.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.43	3e-31	137	Populus trichocarpa	Ptp.6711.1.S1_s_at	CV236299	chalcone synthase	-	9e-37	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	4e-14	79	Triticum aestivum	TaAffx.118590.1.S1_at	BJ317705	-	-	1e-28	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.28	3e-74	278	Vitis vinifera	1615447_at	CF404765	chalcone synthase	-	5e-48	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.02	9e-1	34	Zea mays	Zm.9640.1.A1_at	BM341286	hypothetical protein LOC100273085	-	5e+0	At4g17230	SCL13 (Scarecrow-like 13)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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