Gene omics information

Query gene ID	Gma.4269.3.S1_a_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.4269.3.S1_a_at	CA784404	-	-	3e-19	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	S.X.	H.G.	Please select
0.80	91.5	GmaAffx.92300.1.S1_s_at	CF807658	Chorismate synthase	-	5e-50	At1g48850	EMB1144 (embryo defective 1144)	S.X.	H.G.	Please select
0.60	80.7	Gma.4269.2.S1_a_at	BU083811	-	-	8e-17	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	S.X.	H.G.	Please select
0.59	79.5	GmaAffx.91300.1.S1_s_at	CF805768	-	-	9e-67	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	S.X.	H.G.	Please select
0.31	42.2	Gma.4310.1.S1_at	BE822674	chorismate synthase	-	3e-58	At1g48850	EMB1144 (embryo defective 1144)	S.X.	H.G.	Please select
0.26	33.9	GmaAffx.88920.1.S1_s_at	CK605763	-	-	3e-60	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	98.5	GSM171686	30_V.F.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.5	98.3	GSM292842	21_1443.1L.R271L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM171653	22_Z.E.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.1	98.1	GSM171697	32_Z.B.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.1	98.1	GSM171630	18_Z.I.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.7	97.8	GSM171632	18_W.E.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.6	97.7	GSM171699	3_W.I.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.5	97.7	GSM293887	38_2229.2E.R022L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM293668	92_2081.2B.R035U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM244934	9_SLO.I2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	4e-176	617	Gma.4269.1.S1_at	CD407626	-	-	8e-37	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.73	1e-130	466	Gma.4269.2.S1_a_at	BU083811	-	-	8e-17	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.04	3e-1	36	GmaAffx.43300.1.S1_at	AI442892	-	-	2e-1	At2g30390	FC2 (FERROCHELATASE 2)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C139000009_at	PsAffx.C139000009	-	-	9e+0	At5g03455	CDC25	C.G.	S.X.	Please select
0.04	1e+0	34	Gma.4061.1.A1_at	BQ473315	-	-	3e+0	At1g16022	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	32	PsAffx.psHB013xA19f_at	PsAffx.psHB013xA19f	-	-	1e+0	At1g76980	-	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C9000130_at	PsAffx.C9000130	-	-	8e-1	At4g36660	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C44000063_at	PsAffx.C44000063	-	-	3e-1	At3g04000	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C3000075_s_at	PsAffx.C3000075	-	-	3e-1	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	3e-19	95	Arabidopsis thaliana	At1g27450	839636	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-6	52	Hordeum vulgare	Contig5007_at	Contig5007	-	-	4e-17	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.11	1e-4	48	Oryza sativa	Os.5685.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.43	6e-55	214	Populus trichocarpa	Ptp.5674.2.S1_s_at	BU825206	hypothetical protein	-	9e-54	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	1e-6	54	Triticum aestivum	Ta.43.1.S1_at	U22442.1	adenine phosphoribosyltransferase form 1	-	4e-11	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.27	7e-51	198	Vitis vinifera	1622855_at	CB970053	hypothetical protein LOC100245536	-	4e-42	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.06	1e-4	46	Zea mays	Zm.7071.1.S1_at	CA829702	adenine phosphoribosyltransferase 1	-	6e-10	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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