Gene omics information

Query gene ID	Gma.4269.2.S1_a_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	Gma.4269.2.S1_a_at	BU083811	-	-	8e-17	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	S.X.	H.G.	Please select
0.67	86.1	Gma.4269.3.S1_a_at	CA784404	-	-	3e-19	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.92300.1.S1_s_at	CF807658	Chorismate synthase	-	5e-50	At1g48850	EMB1144 (embryo defective 1144)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.88920.1.S1_s_at	CK605763	-	-	3e-60	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.55342.1.S1_at	AW306993	-	-	5e-3	At1g65560	allyl alcohol dehydrogenase, putative	S.X.	H.G.	Please select
0.27	35.7	GmaAffx.93265.1.S1_s_at	CF808990	aspartate aminotransferase glyoxysomal isozyme AAT1 precursor	-	2e-27	At5g19550	ASP2 (ASPARTATE AMINOTRANSFERASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.7	98.4	GSM292845	24_1445.1L.R272L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM292842	21_1443.1L.R271L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.3	98.2	GSM171686	30_V.F.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.1	98.1	GSM293053	55_1057.1N.R033L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM244778	10_CON.I2W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.9	98.0	GSM171699	3_W.I.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.7	97.8	GSM171630	18_Z.I.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.5	97.7	GSM244891	36_SLO.I3L1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.4	97.6	GSM294028	79_3099.2F.V7F2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	4e-152	537	Gma.4269.1.S1_at	CD407626	-	-	8e-37	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.73	1e-130	466	Gma.4269.3.S1_a_at	CA784404	-	-	3e-19	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.03	2e-2	40	GmaAffx.567.1.S1_at	BE440401	-	-	4e-1	At4g12320	CYP706A6	C.G.	S.X.	Please select
0.04	2e-2	40	GmaAffx.43903.1.S1_at	AW508419	-	-	3e+0	At3g45500	-	C.G.	S.X.	Please select
0.03	1e-1	38	Gma.12512.1.S1_at	CD392421	-	-	1e+0	At1g11608	-	C.G.	S.X.	Please select
0.04	4e-1	36	GmaAffx.43300.1.S1_at	AI442892	-	-	2e-1	At2g30390	FC2 (FERROCHELATASE 2)	C.G.	S.X.	Please select
0.04	4e-1	36	Gma.15574.1.S1_at	BU765504	-	-	2e-1	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C37000015_at	PsAffx.C37000015	-	-	2e+0	At3g26520	TIP2 (TONOPLAST INTRINSIC PROTEIN 2)	C.G.	S.X.	Please select
0.04	2e+0	34	Gma.6559.1.A1_at	CD401937	-	-	5e+0	At4g22870	leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	8e-17	87	Arabidopsis thaliana	At1g27450	839636	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-6	52	Hordeum vulgare	Contig5007_at	Contig5007	-	-	4e-17	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.11	1e-4	48	Oryza sativa	Os.5685.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	6e-37	155	Populus trichocarpa	Ptp.5674.2.S1_s_at	BU825206	hypothetical protein	-	9e-54	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	8e-8	57	Triticum aestivum	Ta.43.1.S1_at	U22442.1	adenine phosphoribosyltransferase form 1	-	4e-11	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.20	7e-33	139	Vitis vinifera	1622855_at	CB970053	hypothetical protein LOC100245536	-	4e-42	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.13	8e-6	50	Zea mays	Zm.14308.1.A1_at	AI979735	adenine phosphoribosyltransferase 1	-	7e-13	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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