Gene omics information

Query gene ID	Gma.405.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	91.5	Gma.405.1.A1_at	AI443411	-	-	3e-3	At5g12940	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.96	99.6	GmaAffx.72586.1.S1_at	CA852308	-	-	1e+0	At4g01450	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.96	99.6	Gma.4914.1.S1_at	BI969778	-	-	9e-1	At4g11940	unknown protein	S.X.	H.G.	Please select
0.96	99.6	GmaAffx.79361.1.S1_at	CA785641	-	-	3e-1	At5g39910	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	S.X.	H.G.	Please select
0.96	99.6	Gma.4914.2.S1_at	BI973233	-	-	4e+0	At5g29054	unknown protein	S.X.	H.G.	Please select
0.96	99.6	Gma.6158.1.S1_at	BI699029	-	-	7e-13	At2g43480	peroxidase, putative	S.X.	H.G.	Please select
0.88	93.4	Gma.16915.1.A1_at	AW309561	-	-	9e-1	At1g72610	GER1 (GERMIN-LIKE PROTEIN 1)	S.X.	H.G.	Please select
0.85	92.8	Gma.8279.1.A1_at	BU549975	-	-	8e-2	At1g68810	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.83	92.5	GmaAffx.6711.1.S1_at	AW350271	-	-	2e-30	At5g57090	EIR1 (ETHYLENE INSENSITIVE ROOT 1)	S.X.	H.G.	Please select
0.79	90.8	Gma.4923.1.S1_at	BI969859	-	-	2e-2	At1g74500	bHLH family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.2	99.7	GSM292746	10_1426.1K.R262P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.1	99.7	GSM293747	7_2141.2C.R116L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.6	99.6	GSM294496	60_2509.2K.R241L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.5	99.6	GSM294436	90_2445.2J.R294U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.5	99.6	GSM293684	22_2141.2C.R116U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.3	99.6	GSM294048	97_2249.2F.R268L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.8	99.5	GSM293883	34_2207.2E.R315L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.9	99.5	GSM294429	84_2437.2J.R091U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.2	99.5	GSM294414	70_2457.2J.R073U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.1	99.5	GSM294583	52_2568.2L.R219P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-2	38	HgAffx.24304.1.S1_at	BF013546	-	-	5e+0	At2g16594	-	C.G.	S.X.	Please select
0.03	3e-1	36	Gma.2030.1.S1_at	CD418266	-	-	6e-11	At3g20820	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.04	3e-1	36	Gma.16983.1.A1_at	BE820271	-	-	2e-1	At5g58740	nuclear movement family protein	C.G.	S.X.	Please select
0.03	1e+0	34	PsAffx.C118000002_at	PsAffx.C118000002	-	-	2e+0	At4g29230	anac075 (Arabidopsis NAC domain containing protein 75)	C.G.	S.X.	Please select
0.02	1e+0	34	GmaAffx.26511.1.S1_at	BE658453	-	-	1e-1	At5g15600	SP1L4 (SPIRAL1-LIKE4)	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.3308.1.S1_at	CD414773	-	-	4e-2	At3g61490	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.3116.1.S1_at	CD394659	-	-	6e-1	At5g02160	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C54000005_at	PsAffx.C54000005	-	-	1e+0	At5g10450	GRF6 (G-box regulating factor 6)	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C30000038_at	PsAffx.C30000038	-	-	7e-3	At1g01240	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-3	42	Arabidopsis thaliana	At5g12940	831134	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	30	Hordeum vulgare	Contig21789_at	Contig21789	-	-	3e-1	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.05	2e+0	34	Oryza sativa	OsAffx.17705.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.121786.1.A1_at	CV226461	-	-	3e-1	At4g21800	QQT2 (quatre-quart2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	30	Triticum aestivum	TaAffx.93485.1.S1_at	BJ208688	-	-	4e-2	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.06	4e+0	30	Vitis vinifera	1620619_at	CB970342	-	-	1e+1	At5g36480	-	C.G.	S.X.	Please select
0.05	3e-1	34	Zea mays	Zm.5515.1.A1_at	CF631927	-	-	3e+0	At2g01580	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage