CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.4035.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 74.2 Gma.4035.1.S1_at BQ453456 - - 1e-38 At5g11560 catalytic S.X. H.G.
0.67 86.1 GmaAffx.92974.1.S1_s_at CF808699 - - 8e-2 At3g17780 unknown protein S.X. H.G.
0.67 86.1 Gma.8460.1.S1_at AF404404.1 acyl-CoA oxidase - 7e-39 At4g16760 ACX1 (ACYL-COA OXIDASE 1) S.X. H.G.
0.44 63.3 Gma.448.2.S1_a_at BM091754 - - 3e-21 At3g60820 PBF1 S.X. H.G.
0.40 57.1 Gma.5368.1.S1_at BQ627877 - - 2e-30 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) S.X. H.G.
0.38 53.3 Gma.17344.1.S1_at CD409198 - - 7e-41 At2g33040 ATP synthase gamma chain, mitochondrial (ATPC) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.0 97.2 GSM293077 77_1077.1N.R046L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6 96.7 GSM258496 Vegetative soybean shoot apical meristem GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.4 96.4 GSM258497 Soybean Shoot Apical Meristem, 1 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.3 96.2 GSM267288 Axillary meristem from 10-day-old soybean seedlings repliacte 2 GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.1 95.8 GSM258502 Vegetative shoot apical meristem, replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.1 95.8 GSM258504 Soybean shoot apical meristem, 4 short-day replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.0 95.6 GSM237068 Soy_shoot apical meristem GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.0 95.6 GSM267287 Axillary meristem from 10-day-old soybean seedlings GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.0 95.6 GSM258499 Soybean shoot apical meristem, 4 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
2.9 95.4 GSM258500 Soybean shoot apical meristem, 6 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-2 40 GmaAffx.66304.1.S1_at AW164351 - - 1e+0 At3g09710 IQD1 (IQ-DOMAIN 1) C.G. S.X.
0.01 6e-1 36 PsAffx.C38000072_at PsAffx.C38000072 - - 2e-1 At2g30590 WRKY21 C.G. S.X.
0.01 2e+0 34 PsAffx.C58000065_at PsAffx.C58000065 - - 4e-1 At5g24890 unknown protein C.G. S.X.
0.01 2e+0 34 PsAffx.C41000080_s_at PsAffx.C41000080 - - 5e-2 At5g07360 amidase family protein C.G. S.X.
0.02 2e+0 34 GmaAffx.89045.1.A1_s_at CK605938 - - 4e-19 At1g11545 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.03 2e+0 34 GmaAffx.80454.2.S1_s_at BU926464 - - 5e-24 At5g65650 unknown protein C.G. S.X.
0.02 2e+0 34 GmaAffx.73797.1.S1_at BU927162 - - 1e-3 At4g17950 DNA-binding family protein C.G. S.X.
0.02 2e+0 34 GmaAffx.64825.1.S1_at AW201848 - - 2e-12 At5g66810 - C.G. S.X.
0.02 2e+0 34 GmaAffx.62391.1.S1_at AW756576 - - 1e-4 At5g08500 transmembrane CLPTM1 family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 1e-38 161 Arabidopsis thaliana At5g11560 831028 catalytic F:catalytic activity;P:unknown;C:endoplasmic reticulum, plasma membrane, vacuole;MFOBPA - - - C.G. S.X.
0.07 1e-21 103 Hordeum vulgare Contig7198_at Contig7198 - - 5e-9 At5g11560 catalytic C.G. S.X.
0.07 6e-8 59 Oryza sativa Os05g0230600 AK070398.1 - WD40-like domain containing protein 1e-7 At5g11560 catalytic C.G. S.X.
0.46 4e-51 202 Populus trichocarpa Ptp.8067.1.S1_at CV263519 hypothetical protein - 9e-18 At5g11560 catalytic C.G. S.X.
0.07 5e-16 85 Triticum aestivum Ta.7610.1.S1_a_at CD889532 - - 1e-6 At5g11560 catalytic C.G. S.X.
0.57 9e-92 335 Vitis vinifera 1620763_at BQ792258 hypothetical protein LOC100264673 - 1e-38 At5g11560 catalytic C.G. S.X.
0.15 2e-16 85 Zea mays Zm.12878.1.S1_at CA400963 - - 9e-3 At5g11560 catalytic C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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