Gene omics information

Query gene ID	Gma.3987.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.3987.1.S1_at	BQ453408	-	-	1e+0	At2g19030	RALFL11 (ralf-like 11)	S.X.	H.G.	Please select
0.73	88.9	GmaAffx.86675.1.S1_at	BI424294	-	-	2e-1	At3g27040	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.67	86.1	Gma.7779.1.S1_at	BU550200	-	-	3e-1	At5g28820	unknown protein	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.61593.1.S1_at	BU765478	-	-	2e-5	At1g02260	transmembrane protein, putative	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.65809.1.S1_at	AW348511	-	-	2e-5	At3g05640	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.50	71.7	Gma.6623.2.S1_s_at	BQ629284	-	-	6e-16	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.7	99.7	GSM293956	13_2286.2F.R031P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.9	99.3	GSM293593	24_2082.2B.R035P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.8	99.3	GSM292506	22_1304.1H.R191P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.4	99.2	GSM293731	65_2116.2C.R115P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.9	99.2	GSM293892	42_2212.2E.R101P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.0	99.0	GSM294338	86_2414.2I.R259P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.7	99.0	GSM292490	87_1274.1G.R174P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.6	98.9	GSM293305	87_1214.1P.R131P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.6	98.9	GSM292583	13_1360.1I.R225P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.4	98.9	GSM294578	48_2554.2L.R215P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	2e-64	246	Gma.3987.2.S1_at	BI971594	-	-	1e+0	At5g56980	unknown protein	C.G.	S.X.	Please select
0.19	2e-64	246	Gma.3987.2.S1_a_at	BI971594	-	-	1e+0	At5g56980	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	36	GmaAffx.5475.1.S1_at	BF324498	-	-	2e-1	At3g26210	CYP71B23	C.G.	S.X.	Please select
0.02	4e-1	36	Gma.5610.1.S1_at	AW348190	-	-	7e-1	At4g19620	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C73000066_at	PsAffx.C73000066	-	-	4e+0	At1g32760	glutaredoxin family protein	C.G.	S.X.	Please select
0.00	2e+0	34	PsAffx.C125000011_s_at	PsAffx.C125000011	-	-	4e+0	At4g27370	VIIIB	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.4517.1.S1_at	CD748907	-	-	2e-2	At4g22250	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.2322.1.S1_at	CK351862	-	-	6e+0	At5g01810	CIPK15 (CBL-INTERACTING PROTEIN KINASE 15)	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.18292.1.A1_at	CA940888	-	-	4e+0	At3g22230	60S ribosomal protein L27 (RPL27B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At2g19030	816420	RALFL11 (ralf-like 11)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	32	Hordeum vulgare	HVSMEi0013A05r2_at	HVSMEi0013A05r2	-	-	3e+0	At2g02960	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	6e-4	46	Oryza sativa	Os10g0447900	AK072242.1	-	Conserved hypothetical protein	6e-12	At1g02260	transmembrane protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	4e-1	36	Populus trichocarpa	PtpAffx.217134.1.S1_s_at	pmrna32279	hypothetical protein	-	9e-1	At4g10920	KELP	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	TaAffx.53847.1.S1_at	CA688523	-	-	4e+0	At3g23245	unknown protein	C.G.	S.X.	Please select
0.29	2e-36	151	Vitis vinifera	1622592_at	CF212806	hypothetical protein LOC100259320	-	1e-6	At1g02260	transmembrane protein, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.39.1.A1_at	AI664850	hypothetical protein LOC100276037	-	2e-1	At1g79760	DTA4 (DOWNSTREAM TARGET OF AGL15-4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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