Gene omics information

Query gene ID	Gma.3735.3.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	92.5	Gma.3735.3.S1_s_at	BU764012	-	-	1e-67	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.92359.1.S1_s_at	CF808084	HMG-1 like protein gene	-	5e-6	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.92473.1.S1_s_at	CF809138	-	-	1e+0	At3g01360	unknown protein	S.X.	H.G.	Please select
0.43	60.6	GmaAffx.92872.1.S1_s_at	CF808597	-	-	3e-51	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	S.X.	H.G.	Please select
0.33	46.1	Gma.3735.1.S1_x_at	CD391849	-	-	7e-65	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	S.X.	H.G.	Please select
0.27	35.7	Gma.10261.1.S1_at	BG839311	-	-	2e-52	At3g27090	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.8	98.4	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
5.2	98.1	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.9	98.0	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.4	96.4	GSM293247	34_C066.1P.R9P2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM292890	65_C202.1L.R9L1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM293459	47_1596.1R.R009P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293526	42_2022.2A.R275P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293491	10_3002.2A.SLA1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM171722	9_V.F.M.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
3.1	95.8	GSM293594	25_2056.2B.R020P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	894	Gma.3735.3.S1_x_at	BU764012	-	-	1e-67	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.94	0	894	Gma.3735.3.S1_at	BU764012	-	-	1e-67	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.53	0	704	Gma.3735.1.S1_x_at	CD391849	-	-	7e-65	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select
0.60	0	664	GmaAffx.93316.1.S1_at	CF808110	-	-	2e-64	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select
0.48	4e-161	567	Gma.3735.2.S1_at	BU545833	-	-	1e-60	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.56	4e-44	178	Gma.7227.1.S1_at	BU551112	-	-	1e-55	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.25	7e-21	101	Gma.7227.2.S1_at	AW759183	-	-	3e-22	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select
0.25	7e-21	101	Gma.7227.2.S1_a_at	AW759183	-	-	3e-22	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select
0.25	7e-21	101	Gma.7227.2.S1_x_at	AW759183	-	-	3e-22	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	1e-67	256	Arabidopsis thaliana	At1g14400	838002	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	ubiquitin carrier protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.47	3e-67	254	Hordeum vulgare	Contig7567_at	Contig7567	-	-	5e-56	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select
0.41	2e-62	240	Oryza sativa	Os03g0791800	AB079798.1	-	Rad6 (Ubiquitin carrier protein)	2e-46	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.45	3e-78	291	Populus trichocarpa	PtpAffx.5122.4.S1_s_at	CV260788	histone ubiquitination proteins group	-	3e-76	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	2e-54	212	Triticum aestivum	Ta.20628.1.S1_at	CA486841	-	-	7e-49	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.45	9e-94	341	Vitis vinifera	1606968_at	BQ798478	hypothetical protein LOC100246805	-	1e-75	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.42	3e-82	303	Zea mays	Zm.3859.1.A1_at	BM335999	ubiquitin-conjugating enzyme E2-17 kDa	-	4e-57	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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