Gene omics information

Query gene ID	Gma.3735.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	82.9	Gma.3735.2.S1_at	BU545833	-	-	1e-60	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	S.X.	H.G.	Please select
0.61	81.8	Gma.10607.1.A1_at	AW350443	-	-	8e-8	At4g38480	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.22480.1.S1_at	BU550128	-	-	1e-26	At3g48330	PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.36	50.8	Gma.3025.1.S1_at	CA783326	-	-	9e-47	At5g47540	binding	S.X.	H.G.	Please select
0.30	40.4	Gma.8062.1.A1_a_at	BI971176	-	-	1e-7	At2g21630	transport protein, putative	S.X.	H.G.	Please select
0.19	23.7	Gma.9522.1.S1_at	AW307593	MYB transcription factor MYB107	-	6e-7	At1g17520	DNA-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.1	95.8	GSM292836	16_1473.1L.R287U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM292868	45_1470.1L.R285P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM293110	25_C040.1O.SLO1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM294248	96_2370.2H.R149P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM292920	92_1474.1L.R287P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM292206	69-1017.1A.R010U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM292218	86-C016.1A.V7A3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM292892	67_1464.1L.R282P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM294578	48_2554.2L.R215P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293836	76_2176.2D.R217P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	686	GmaAffx.93316.1.S1_at	CF808110	-	-	2e-64	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select
0.43	0	682	Gma.3735.1.S1_x_at	CD391849	-	-	7e-65	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select
0.48	8e-161	567	Gma.3735.3.S1_x_at	BU764012	-	-	1e-67	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.48	8e-161	567	Gma.3735.3.S1_s_at	BU764012	-	-	1e-67	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.48	8e-161	567	Gma.3735.3.S1_at	BU764012	-	-	1e-67	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.47	2e-65	250	Gma.7227.1.S1_at	BU551112	-	-	1e-55	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.16	3e-18	93	Gma.7227.2.S1_at	AW759183	-	-	3e-22	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select
0.16	3e-18	93	Gma.7227.2.S1_a_at	AW759183	-	-	3e-22	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select
0.16	3e-18	93	Gma.7227.2.S1_x_at	AW759183	-	-	3e-22	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	1e-60	234	Arabidopsis thaliana	At1g14400	838002	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	ubiquitin carrier protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.38	1e-73	276	Hordeum vulgare	Contig4469_at	Contig4469	-	-	4e-63	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.38	9e-72	272	Oryza sativa	Os03g0791800	AB079798.1	-	Rad6 (Ubiquitin carrier protein)	2e-46	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.41	4e-101	369	Populus trichocarpa	PtpAffx.5122.4.S1_s_at	CV260788	histone ubiquitination proteins group	-	3e-76	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	8e-71	268	Triticum aestivum	Ta.20628.1.S1_at	CA486841	-	-	7e-49	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.41	1e-112	404	Vitis vinifera	1606968_at	BQ798478	hypothetical protein LOC100246805	-	1e-75	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.35	5e-73	274	Zea mays	Zm.4985.1.A1_at	CO533545	ubiquitin-conjugating enzyme E2-17 kDa	-	2e-25	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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