CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.3730.2.S1_a_at

Gene name transcription factor

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 Gma.3730.2.S1_a_at BI320846 transcription factor - 9e-15 At1g80840 WRKY40 S.X. H.G.
0.91 98.6 GmaAffx.91768.1.S1_s_at CF807493 transcription factor - 1e-6 At2g25000 WRKY60 S.X. H.G.
0.57 78.8 Gma.10818.2.S1_at AW568786 WRKY78 - 8e-23 At1g80840 WRKY40 S.X. H.G.
0.56 78.2 GmaAffx.17284.1.A1_s_at BE659740 - - 2e+0 At5g14330 unknown protein S.X. H.G.
0.55 76.3 GmaAffx.91768.1.S1_at CF807493 transcription factor - 1e-6 At2g25000 WRKY60 S.X. H.G.
0.16 19.7 Gma.7226.2.S1_a_at BM887472 mitogen-activated protein kinase 1 - 6e-63 At3g45640 ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.5 98.7 GSM292208 70_C004.1A.R9A1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2 98.6 GSM292458 58_1257.1G.R164U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6 98.3 GSM292205 67-C015.1A.V7A3U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5 98.3 GSM292481 79_1257.1G.R164L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2 98.1 GSM292451 51_1263.1G.R167U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2 98.1 GSM292469 68_1280.1G.R178P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1 98.1 GSM293595 26_2077.2B.R246U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM292459 59_1282.1G.R179P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM292238 45_1051.1B.R029L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM292210 72-C002.1A.V7A1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 0 751 GmaAffx.91768.1.S1_at CF807493 transcription factor - 1e-6 At2g25000 WRKY60 C.G. S.X.
0.50 0 751 GmaAffx.91768.1.S1_s_at CF807493 transcription factor - 1e-6 At2g25000 WRKY60 C.G. S.X.
0.37 8e-81 301 Gma.10818.1.S1_at BE820324 WRKY78 - 1e-24 At1g80840 WRKY40 C.G. S.X.
0.26 3e-43 176 Gma.10818.2.S1_at AW568786 WRKY78 - 8e-23 At1g80840 WRKY40 C.G. S.X.
0.26 3e-43 176 Gma.10818.2.S1_a_at AW568786 WRKY78 - 8e-23 At1g80840 WRKY40 C.G. S.X.
0.26 1e-36 155 Gma.10818.3.S1_at BF070314 WRKY78 - 3e+0 At4g20420 tapetum-specific protein-related C.G. S.X.
0.13 3e-9 63 GmaAffx.68985.1.S1_at BM187736 WRKY17 protein - 9e-10 At1g80840 WRKY40 C.G. S.X.
0.11 3e-6 54 Gma.16733.2.S1_at BE803290 transcription factor - 1e-4 At1g80840 WRKY40 C.G. S.X.
0.01 2e-1 38 PsAffx.C78000019_at PsAffx.C78000019 - - 1e+0 At2g32080 PUR ALPHA-1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 9e-15 81 Arabidopsis thaliana At1g80840 844423 WRKY40 Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. - - - C.G. S.X.
0.03 4e+0 32 Hordeum vulgare HV_CEa0011G08r2_x_at HV_CEa0011G08r2 - - 1e+0 At3g25265 LCR4 (Low-molecular-weight cysteine-rich 4) C.G. S.X.
0.09 2e-8 61 Oryza sativa Os.12032.1.S1_at - - - 0 C.G. S.X.
0.31 3e-52 206 Populus trichocarpa PtpAffx.10586.1.S1_at BP930543 hypothetical protein - 1e-26 At1g80840 WRKY40 C.G. S.X.
0.02 8e+0 32 Triticum aestivum TaAffx.9129.1.S1_x_at CA611126 - - 3e+0 At2g12200 ligase, putative C.G. S.X.
0.14 5e-32 137 Vitis vinifera 1614806_s_at CB343751 hypothetical protein LOC100264507 - 2e-4 At2g25000 WRKY60 C.G. S.X.
0.02 1e+1 30 Zea mays Zm.9580.2.S1_at AI734597 - - 2e+0 At2g31305 INH3 (INHIBITOR-3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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