Gene omics information

Query gene ID	Gma.3626.2.S1_x_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	80.7	Gma.3626.2.S1_x_at	BQ612673	-	-	2e-60	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	S.X.	H.G.	Please select
0.78	90.6	Gma.5964.1.S1_at	AW348696	-	-	3e-62	At3g13235	ubiquitin family protein	S.X.	H.G.	Please select
0.63	82.9	Gma.8209.1.S1_at	BU546771	-	-	2e-47	At5g58100	unknown protein	S.X.	H.G.	Please select
0.63	82.9	Gma.11232.1.S1_s_at	BI943460	-	-	0	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	S.X.	H.G.	Please select
0.60	80.7	Gma.4214.1.S1_at	CD418435	mitogen-activated protein kinase 2	-	5e-70	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	S.X.	H.G.	Please select
0.60	80.7	Gma.5581.1.S1_at	CD392224	-	-	8e-53	At3g27430	PBB1	S.X.	H.G.	Please select
0.56	78.2	Gma.11256.1.S1_at	CD401123	-	-	7e-28	At1g56450	PBG1	S.X.	H.G.	Please select
0.47	66.6	Gma.17905.2.S1_at	CD393233	-	-	8e-37	At4g01320	ATSTE24	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.56409.1.S1_at	BU965321	-	-	1e-16	At1g08750	GPI-anchor transamidase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	96.2	GSM293589	20_2073.2B.R308L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293584	16_2089.2B.R181U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM293772	18_2164.2D.R027P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM293605	35_2091.2B.R298U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM293333	22_1549.1Q.R078L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM293581	13_2067.2B.R163L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM292892	67_1464.1L.R282P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM293545	5_3015.2A.V7A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM293586	18_2092.2B.R298P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293654	7_2070.2B.R213P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	3215	Gma.3626.2.S1_a_at	BQ612673	-	-	4e-52	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	C.G.	S.X.	Please select
0.56	0	995	Gma.3626.1.S1_at	BE800416	-	-	5e-38	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	C.G.	S.X.	Please select
0.03	3e-7	57	PsAffx.CL262Contig1_at	PsAffx.CL262Contig1	-	-	3e+0	At1g05330	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	36	GmaAffx.9089.1.S1_at	BM891903	-	-	2e-3	At5g19480	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	36	GmaAffx.15649.1.S1_at	CA935654	-	-	5e-1	At5g42957	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	36	Gma.16885.1.S1_at	AW570537	-	-	4e-31	At3g45980	HTB9	C.G.	S.X.	Please select
0.00	5e+0	34	PsAffx.C2000018_at	PsAffx.C2000018	-	-	2e-1	At1g64300	protein kinase family protein	C.G.	S.X.	Please select
0.01	5e+0	34	PsAffx.C134000014_at	PsAffx.C134000014	-	-	6e-1	At3g62620	sucrose-phosphatase-related	C.G.	S.X.	Please select
0.02	5e+0	34	HgAffx.3734.1.A1_at	CK348956	-	-	9e+0	At5g61110	protein binding / zinc ion binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	2e-60	234	Arabidopsis thaliana	At3g59920	825162	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	RAB GDP DISSOCIATION INHIBITOR 2	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.51	1e-75	284	Hordeum vulgare	Contig2507_at	Contig2507	-	-	2e-51	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	C.G.	S.X.	Please select
0.44	8e-46	186	Oryza sativa	Os05g0304400	AF016897.1	-	GDP dissociation inhibitor protein OsGDI2	7e-51	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.48	0	698	Populus trichocarpa	Ptp.1244.1.S1_s_at	BP934439	hypothetical protein	-	2e-96	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	4e-74	280	Triticum aestivum	Ta.7677.1.S1_x_at	CK194882	-	-	5e-58	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	C.G.	S.X.	Please select
0.57	1e-160	565	Vitis vinifera	1616860_at	BQ792203	hypothetical protein LOC100261021	-	4e-83	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	C.G.	S.X.	Please select
0.42	4e-44	178	Zea mays	Zm.5495.1.S1_at	AY103870.1	-	-	1e-30	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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