Gene omics information

Query gene ID	Gma.3626.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.3626.1.S1_at	BE800416	-	-	5e-38	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	S.X.	H.G.	Please select
0.67	86.1	Gma.5678.1.S1_at	CD405283	-	-	8e-61	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	S.X.	H.G.	Please select
0.67	86.1	Gma.5678.2.S1_a_at	CD417564	-	-	2e-70	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	S.X.	H.G.	Please select
0.60	80.7	Gma.10823.2.S1_at	BM307619	-	-	2e-82	At5g36230	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	S.X.	H.G.	Please select
0.50	71.7	Gma.11129.1.S1_s_at	BE657610	-	-	6e-119	At3g05840	ATSK12	S.X.	H.G.	Please select
0.48	67.7	Gma.4496.1.A1_at	BF219518	-	-	1e+1	At5g13810	glutaredoxin family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	97.7	GSM201123	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.9	97.1	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.6	96.7	GSM191085	Soybean_Cotyledon_HI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.4	96.4	GSM191086	Soybean_Cotyledon_HI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.4	96.4	GSM292178	34-1006.1A.R003P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM182044	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.3	96.2	GSM191088	Soybean_Cotyledon_II2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.0	95.6	GSM182043	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.0	95.6	GSM293333	22_1549.1Q.R078L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM182037	Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	0	995	Gma.3626.2.S1_a_at	BQ612673	-	-	4e-52	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	C.G.	S.X.	Please select
0.56	0	995	Gma.3626.2.S1_x_at	BQ612673	-	-	2e-60	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	C.G.	S.X.	Please select
0.02	7e-1	36	GmaAffx.9089.1.S1_at	BM891903	-	-	2e-3	At5g19480	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C94000048_at	PsAffx.C94000048	-	-	1e-2	At5g65790	MYB68 (MYB DOMAIN PROTEIN 68)	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C80000064_at	PsAffx.C80000064	-	-	2e+0	At2g47870	glutaredoxin family protein	C.G.	S.X.	Please select
0.00	3e+0	34	PsAffx.C2000018_at	PsAffx.C2000018	-	-	2e-1	At1g64300	protein kinase family protein	C.G.	S.X.	Please select
0.02	3e+0	34	HgAffx.18875.1.S1_at	CA940305	-	-	4e+0	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	C.G.	S.X.	Please select
0.02	3e+0	34	GmaAffx.90399.1.S1_s_at	CF806124	-	-	4e-13	At1g14260	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e+0	34	GmaAffx.90399.1.S1_at	CF806124	-	-	4e-13	At1g14260	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	5e-38	159	Arabidopsis thaliana	At2g44100	819016	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	GDP dissociation inhibitor involved in vesicular membrane traffic	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	2e-26	119	Hordeum vulgare	Contig2507_at	Contig2507	-	-	2e-51	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	C.G.	S.X.	Please select
0.25	2e-20	101	Oryza sativa	Os05g0304400	AF016897.1	-	GDP dissociation inhibitor protein OsGDI2	7e-51	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.51	1e-113	410	Populus trichocarpa	PtpAffx.152437.1.S1_s_at	CV254283	hypothetical protein	-	1e-69	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	2e-9	63	Triticum aestivum	Ta.7299.2.S1_a_at	CA605243	-	-	5e-12	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	C.G.	S.X.	Please select
0.36	3e-98	357	Vitis vinifera	1616860_at	BQ792203	hypothetical protein LOC100261021	-	4e-83	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	C.G.	S.X.	Please select
0.20	4e-21	101	Zea mays	Zm.5495.1.S1_at	AY103870.1	-	-	1e-30	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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