CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.3568.1.S1_x_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 80.7 Gma.3568.1.S1_x_at BI941735 - - 1e-54 At5g10260 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) S.X. H.G.
0.91 98.6 Gma.10802.1.S1_a_at BI969275 Clone GMFP1 isoprenylated protein - 4e-12 At3g44110 ATJ3 S.X. H.G.
0.71 87.8 Gma.3568.2.S1_at BM308236 - - 3e-42 At2g44610 RAB6A S.X. H.G.
0.67 86.1 Gma.8407.1.S1_x_at AW348317 ADP-ribosylation factor - 9e-120 At2g47170 ARF1A1C S.X. H.G.
0.60 80.7 Gma.8407.1.S1_at AW348317 ADP-ribosylation factor - 9e-120 At2g47170 ARF1A1C S.X. H.G.
0.55 76.3 Gma.10261.1.S1_at BG839311 - - 2e-52 At3g27090 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.2 98.6 GSM292208 70_C004.1A.R9A1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4 98.2 GSM292373 47_C104.1F.R9F3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM292211 74-C018.1A.R9A3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9 98.0 GSM294244 92_2340.2H.R202P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM294514 77_2502.2K.R025P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5 97.7 GSM294218 69_3140.2H.R9H3P_new, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5 97.7 GSM292890 65_C202.1L.R9L1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4 97.6 GSM293459 47_1596.1R.R009P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3 97.5 GSM294206 58_2338.2H.R240P_new, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2 97.4 GSM293548 62_3010.2A.R9A2P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.72 0 1043 Gma.3568.2.S1_a_at BM308236 - - 3e-42 At2g44610 RAB6A C.G. S.X.
0.72 0 1043 Gma.3568.2.S1_at BM308236 - - 3e-42 At2g44610 RAB6A C.G. S.X.
0.42 3e-145 515 Gma.16367.1.S1_at BU083406 - - 1e-51 At5g10260 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) C.G. S.X.
0.26 5e-79 295 Gma.16367.2.S1_a_at CA782572 - - 8e-41 At2g44610 RAB6A C.G. S.X.
0.06 3e-3 44 Gma.4268.2.S1_a_at AW569523 - - 1e-64 At3g18820 ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) C.G. S.X.
0.02 1e-2 42 PsAffx.C36000092_at PsAffx.C36000092 - - 1e-2 At3g18820 ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) C.G. S.X.
0.02 2e-1 38 GmaAffx.92012.1.S1_at CF807737 - - 4e-81 At1g75840 ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) C.G. S.X.
0.03 8e-1 36 GmaAffx.58635.1.S1_at BF068235 - - 2e+0 At5g45875 SCRL27 (SCR-Like 27) C.G. S.X.
0.01 3e+0 34 PsAffx.C81000015_at PsAffx.C81000015 - - 3e+0 At5g49620 AtMYB78 (myb domain protein 78) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 1e-54 214 Arabidopsis thaliana At5g10260 830890 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA - - - C.G. S.X.
0.38 1e-92 339 Hordeum vulgare Contig7349_at Contig7349 - - 1e-66 At2g44610 RAB6A C.G. S.X.
0.39 6e-61 236 Oryza sativa OsAffx.16506.1.S1_at - - - 0 C.G. S.X.
0.44 3e-31 137 Populus trichocarpa PtpAffx.205177.1.S1_at pmrna10251 hypothetical protein - 4e-93 At5g10260 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) C.G. S.X.
0.38 1e-85 317 Triticum aestivum Ta.28749.1.S1_a_at CK213968 - - 2e-59 At2g44610 RAB6A C.G. S.X.
0.42 1e-141 502 Vitis vinifera 1621785_at CF213480 hypothetical protein LOC100242004 - 2e-101 At2g44610 RAB6A C.G. S.X.
0.38 2e-94 345 Zea mays Zm.8122.1.A1_at BM736458 hypothetical protein LOC100274535 - 4e-73 At2g44610 RAB6A C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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