CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.3262.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 92.5 Gma.3262.1.S1_at AI960141 - - 4e-11 At3g54700 carbohydrate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter S.X. H.G.
0.36 50.8 GmaAffx.4382.2.S1_at BQ452666 - - 7e-46 At1g73950 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.27 35.7 Gma.9061.1.S1_at CA819289 - - 4e-1 At1g23724 unknown protein S.X. H.G.
0.17 21.2 Gma.7517.1.S1_at BU548272 - - 2e-9 At2g45910 protein kinase family protein / U-box domain-containing protein S.X. H.G.
0.14 17.5 GmaAffx.46969.1.S1_at BE806934 - - 6e-22 At4g33950 OST1 (OPEN STOMATA 1) S.X. H.G.
0.05 8.0 Gma.12040.1.S1_at CA783276 - - 2e-2 At4g39870 - S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.8 99.7 GSM209593 susceptible_6hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
20.7 99.7 GSM209575 susceptible_6hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
15.0 99.6 GSM209574 resistant_6hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
14.6 99.6 GSM209592 resistant_6hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
10.5 99.3 GSM209576 resistant_12hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
10.2 99.3 GSM209594 resistant_12hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
10.2 99.3 GSM209578 resistant_24hours_rep1 failed QC GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
9.4 99.2 GSM209597 susceptible_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
9.3 99.2 GSM209586 susceptible_12hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.6 99.1 GSM292175 30-C012.1A.SLA2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 8e-32 139 GmaAffx.10989.1.S1_at CA851637 - - 3e-1 At5g43350 PHT1 C.G. S.X.
0.03 9e-4 46 Gma.2372.1.S1_at BM143592 - - 7e-5 At2g38940 ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2) C.G. S.X.
0.02 2e-1 38 GmaAffx.71666.1.S1_at BE058823 - - 8e-1 At1g65845 unknown protein C.G. S.X.
0.01 9e-1 36 PsAffx.C225000010_at PsAffx.C225000010 - - 6e-3 At1g26610 zinc finger (C2H2 type) family protein C.G. S.X.
0.00 9e-1 36 PsAffx.C11000097_at PsAffx.C11000097 - - 1e+0 At2g40090 ATATH9 C.G. S.X.
0.01 3e+0 34 PsAffx.C43000021_at PsAffx.C43000021 - - 5e-2 At5g44570 unknown protein C.G. S.X.
0.01 3e+0 34 PsAffx.C24000058_at PsAffx.C24000058 - - 3e+0 At2g38680 5'-nucleotidase/ magnesium ion binding C.G. S.X.
0.02 3e+0 34 GmaAffx.85567.2.S1_at AW830902 - - 2e-5 At5g08540 unknown protein C.G. S.X.
0.01 3e+0 34 Gma.17790.1.S1_at BF425730 - - 1e-94 At1g79570 protein kinase family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 4e-11 69 Arabidopsis thaliana At3g54700 824635 carbohydrate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter F:phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, phosphate transport;C:plasma membrane, membrane;BFMPOA - - - C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig19231_at Contig19231 - - 2e+0 At5g18140 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.03 5e-9 63 Oryza sativa Os08g0564000 AK119787.1 - Phosphate transporter 6 1e-12 At5g43360 PHT3 (PHOSPHATE TRANSPORTER 3) C.G. S.X.
0.33 5e-36 153 Populus trichocarpa PtpAffx.201089.1.S1_at pmrna2153 high affinity inorganic phosphate transporter - 2e-29 At5g43360 PHT3 (PHOSPHATE TRANSPORTER 3) C.G. S.X.
0.08 5e-11 69 Triticum aestivum Ta.18863.1.S1_a_at CA607963 - - 2e-6 At5g43360 PHT3 (PHOSPHATE TRANSPORTER 3) C.G. S.X.
0.15 2e-35 149 Vitis vinifera 1607681_at CD802479 hypothetical protein LOC100257925 - 5e-28 At5g43370 APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) C.G. S.X.
0.05 5e-9 61 Zea mays Zm.7659.1.S1_at AY639019.1 phosphate transport protein - 5e-12 At5g43360 PHT3 (PHOSPHATE TRANSPORTER 3) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage